RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PLA2G12BQ9BX93 195 aa15.86■□□□□ 0.13
UPF1-208ENST00000600012 GCKRQ14397 625 aa15.85■□□□□ 0.13
UPF1-208ENST00000600012 NBPF9Q3BBW0 867 aa15.85■□□□□ 0.13
UPF1-208ENST00000600012 DNAAF4Q8WXU2 420 aa15.85■□□□□ 0.13
UPF1-208ENST00000600012 FBXW7Q969H0 707 aa15.85■□□□□ 0.13
UPF1-208ENST00000600012 ANKRD2Q9GZV1 360 aa15.85■□□□□ 0.13
UPF1-208ENST00000600012 WNT10BO00744 389 aa15.84■□□□□ 0.13
UPF1-208ENST00000600012 ITGA6P23229 1130 aa15.84■□□□□ 0.13
UPF1-208ENST00000600012 MPHOSPH8Q99549 860 aa15.84■□□□□ 0.13
UPF1-208ENST00000600012 ZNF804BA4D1E1 1349 aa15.84■□□□□ 0.13
UPF1-208ENST00000600012 NF2P35240 595 aa15.83■□□□□ 0.12
UPF1-208ENST00000600012 CASP7P55210 303 aa15.83■□□□□ 0.12
UPF1-208ENST00000600012 TXNRD3Q86VQ6 643 aa15.83■□□□□ 0.12
UPF1-208ENST00000600012 MXD3Q9BW11 206 aa15.83■□□□□ 0.12
UPF1-208ENST00000600012 A0A1B0GUL6 1792 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 PDE4DIPQ5VU43 2346 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 CSF1RP07333 972 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 TTLL5Q6EMB2 1281 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 LINS1Q8NG48 757 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 CCDC136Q96JN2 1154 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 HDAC9Q9UKV0 1011 aa15.82■□□□□ 0.12
UPF1-208ENST00000600012 SCAF8Q9UPN6 1271 aaKnown RBP15.82■□□□□ 0.12
UPF1-208ENST00000600012 UBE2Q2LH0YL09 131 aa15.81■□□□□ 0.12
UPF1-208ENST00000600012 ZBTB7BO15156 539 aaPredicted RBP15.81■□□□□ 0.12
UPF1-208ENST00000600012 KCNJ4P48050 445 aa15.81■□□□□ 0.12
UPF1-208ENST00000600012 TTLL12Q14166 644 aaPredicted RBP15.81■□□□□ 0.12
UPF1-208ENST00000600012 PRAMEF18Q5VWM3 479 aa15.81■□□□□ 0.12
UPF1-208ENST00000600012 ECM29Q5VYK3 1845 aa15.81■□□□□ 0.12
UPF1-208ENST00000600012 MOB2Q70IA6 237 aa15.81■□□□□ 0.12
UPF1-208ENST00000600012 CTU1Q7Z7A3 348 aaKnown RBP15.81■□□□□ 0.12
UPF1-208ENST00000600012 APOBEC3FQ8IUX4 373 aaKnown RBP15.81■□□□□ 0.12
UPF1-208ENST00000600012 SASH1O94885 1247 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 KLRK1P26718 216 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 CHRNDQ07001 517 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 BEND3Q5T5X7 828 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 MEIS3Q99687 375 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 SRCIN1Q9C0H9 1055 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 C1orf115Q9H7X2 142 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 ZBTB40Q9NUA8 1239 aa15.8■□□□□ 0.12
UPF1-208ENST00000600012 COL1A1P02452 1464 aaPredicted RBP15.79■□□□□ 0.12
UPF1-208ENST00000600012 ANKRD18BA2A2Z9 1011 aa15.79■□□□□ 0.12
UPF1-208ENST00000600012 GTF2IP78347 998 aa15.79■□□□□ 0.12
UPF1-208ENST00000600012 ARMC9Q7Z3E5 817 aa15.79■□□□□ 0.12
UPF1-208ENST00000600012 KIAA0825Q8IV33 1275 aa15.79■□□□□ 0.12
UPF1-208ENST00000600012 PCDHB15Q9Y5E8 787 aa15.79■□□□□ 0.12
UPF1-208ENST00000600012 AAMPQ13685 434 aa15.78■□□□□ 0.12
UPF1-208ENST00000600012 ZBED3Q96IU2 234 aaPredicted RBP15.78■□□□□ 0.12
UPF1-208ENST00000600012 CD209Q9NNX6 404 aa15.78■□□□□ 0.12
UPF1-208ENST00000600012 SLC34A2O95436 690 aa15.77■□□□□ 0.12
UPF1-208ENST00000600012 TM4SF4P48230 202 aa15.77■□□□□ 0.12
UPF1-208ENST00000600012 IFIT5Q13325 482 aaKnown RBP15.77■□□□□ 0.12
UPF1-208ENST00000600012 C15orf52Q6ZUT6 534 aaKnown RBP15.77■□□□□ 0.12
UPF1-208ENST00000600012 CHMP4BQ9H444 224 aaKnown RBP15.77■□□□□ 0.12
UPF1-208ENST00000600012 IRS2Q9Y4H2 1338 aa15.76■□□□□ 0.11
UPF1-208ENST00000600012 SREBF2Q12772 1141 aa15.76■□□□□ 0.11
UPF1-208ENST00000600012 DLGAP5Q15398 846 aa15.76■□□□□ 0.11
UPF1-208ENST00000600012 PKN2Q16513 984 aaKnown RBP15.76■□□□□ 0.11
UPF1-208ENST00000600012 NOM1Q5C9Z4 860 aaKnown RBP15.76■□□□□ 0.11
UPF1-208ENST00000600012 ALDH1L1O75891 902 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 TBC1D8O95759 1140 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 SOX10P56693 466 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 FOXO4P98177 505 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 PTPN12Q05209 780 aaKnown RBP15.75■□□□□ 0.11
UPF1-208ENST00000600012 ZNF804AQ7Z570 1209 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 MTMR14Q8NCE2 650 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 ZNF296Q8WUU4 475 aaPredicted RBP15.75■□□□□ 0.11
UPF1-208ENST00000600012 CHMP3Q9Y3E7 222 aa15.75■□□□□ 0.11
UPF1-208ENST00000600012 TAF5LO75529 589 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 MKRN3Q13064 507 aaKnown RBP15.74■□□□□ 0.11
UPF1-208ENST00000600012 PRKG1Q13976 671 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 LDLRAD1Q5T700 205 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 CERS5Q8N5B7 392 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 HELBQ8NG08 1087 aaPredicted RBP15.74■□□□□ 0.11
UPF1-208ENST00000600012 USP44Q9H0E7 712 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 DEFB129Q9H1M3 183 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 ANGEL1Q9UNK9 670 aaKnown RBP15.74■□□□□ 0.11
UPF1-208ENST00000600012 PPP2R3BQ9Y5P8 575 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 LAMB1P07942 1786 aa15.74■□□□□ 0.11
UPF1-208ENST00000600012 GPR25O00155 361 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 SNAP23O00161 211 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 IGHDP01880 384 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 GNAI3P08754 354 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 IL1R1P14778 569 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 FKBP1AP62942 108 aaKnown RBP15.73■□□□□ 0.11
UPF1-208ENST00000600012 CFHR5Q9BXR6 569 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 HPS5Q9UPZ3 1129 aa15.73■□□□□ 0.11
UPF1-208ENST00000600012 GRM8O00222 908 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 MYO1BO43795 1136 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 NBPF7P0C2Y1 421 aaPredicted RBP15.72■□□□□ 0.11
UPF1-208ENST00000600012 UBTFL1P0CB47 393 aaPredicted RBP15.72■□□□□ 0.11
UPF1-208ENST00000600012 MAP3K11Q16584 847 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 CCDC57Q2TAC2 916 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 TAF7LQ5H9L4 462 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 SPRYD7Q5W111 196 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 LMBR1LQ6UX01 489 aa15.72■□□□□ 0.11
UPF1-208ENST00000600012 SSC5DA1L4H1 1573 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 SPDYE2BA6NHP3 402 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 PPP1R12BO60237 982 aaPredicted RBP15.71■□□□□ 0.11
UPF1-208ENST00000600012 ALDH1A1P00352 501 aa15.71■□□□□ 0.11
UPF1-208ENST00000600012 GNAI2P04899 355 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms