RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TPRNQ4KMQ1 711 aa17.16■□□□□ 0.34
VRK3-217ENST00000599538 SPATA5Q8NB90 893 aa17.16■□□□□ 0.34
VRK3-217ENST00000599538 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.16■□□□□ 0.342e-7■■■□□ 18.9
VRK3-217ENST00000599538 CCNL1Q9UK58 526 aaPredicted RBP17.16■□□□□ 0.34
VRK3-217ENST00000599538 TCRBV5S4A2TA0A5A2 114 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 RPS6KA4O75676 772 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 FGD1P98174 961 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 DNM1Q05193 864 aaKnown RBP17.15■□□□□ 0.34
VRK3-217ENST00000599538 TTF1Q15361 905 aaPredicted RBP17.15■□□□□ 0.34
VRK3-217ENST00000599538 FAM173BQ6P4H8 233 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 FERMT3Q86UX7 667 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 NKX2-3Q8TAU0 364 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 DENND2AQ9ULE3 1009 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 CASZ1Q86V15 1759 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 HMGB1P09429 215 aaKnown RBP17.15■□□□□ 0.34
VRK3-217ENST00000599538 ZNF445P59923 1031 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 MEX3CQ5U5Q3 659 aaKnown RBP17.15■□□□□ 0.34
VRK3-217ENST00000599538 AGXT2Q9BYV1 514 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 NARFQ9UHQ1 456 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 AFF2P51816 1311 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 NHSQ6T4R5 1651 aa17.15■□□□□ 0.34
VRK3-217ENST00000599538 FIBPO43427 364 aa17.14■□□□□ 0.33
VRK3-217ENST00000599538 RC3H1Q5TC82 1133 aaKnown RBP17.14■□□□□ 0.33
VRK3-217ENST00000599538 NBPF3Q9H094 633 aa17.14■□□□□ 0.33
VRK3-217ENST00000599538 IQSEC3Q9UPP2 1182 aaPredicted RBP17.14■□□□□ 0.33
VRK3-217ENST00000599538 SCN7AQ01118 1682 aa17.14■□□□□ 0.33
VRK3-217ENST00000599538 PPFIA3O75145 1194 aa17.14■□□□□ 0.33
VRK3-217ENST00000599538 UBE3CQ15386 1083 aa17.14■□□□□ 0.33
VRK3-217ENST00000599538 SF3B3Q15393 1217 aaKnown RBP17.14■□□□□ 0.33
VRK3-217ENST00000599538 CELF1Q92879 486 aaKnown RBP17.14■□□□□ 0.33
VRK3-217ENST00000599538 DDX11Q96FC9 970 aa17.14■□□□□ 0.33
VRK3-217ENST00000599538 ISY1Q9ULR0 285 aaKnown RBP17.14■□□□□ 0.33
VRK3-217ENST00000599538 CCT2P78371 535 aaKnown RBP17.13■□□□□ 0.33
VRK3-217ENST00000599538 IMMTQ16891 758 aaKnown RBP17.13■□□□□ 0.33
VRK3-217ENST00000599538 ZSCAN25Q6NSZ9 544 aa17.13■□□□□ 0.33
VRK3-217ENST00000599538 TMEM87AQ8NBN3 555 aa17.13■□□□□ 0.33
VRK3-217ENST00000599538 CERKQ8TCT0 537 aa17.13■□□□□ 0.33
VRK3-217ENST00000599538 NCOA5Q9HCD5 579 aaKnown RBP17.13■□□□□ 0.33
VRK3-217ENST00000599538 ATRNO75882 1429 aa17.13■□□□□ 0.33
VRK3-217ENST00000599538 CTDNEP1O95476 244 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 MBD3O95983 291 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 GTF2E1P29083 439 aaPredicted RBP17.12■□□□□ 0.33
VRK3-217ENST00000599538 ARHGEF1Q92888 912 aaKnown RBP17.12■□□□□ 0.33
VRK3-217ENST00000599538 CTNNA3Q9UI47 895 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 SYCE3A1L190 88 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 PFKFB2O60825 505 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 ANKRD18AQ8IVF6 992 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 MAGEB6Q8N7X4 407 aa17.12■□□□□ 0.33
VRK3-217ENST00000599538 CDC5LQ99459 802 aaKnown RBP17.12■□□□□ 0.33
VRK3-217ENST00000599538 GYG1P46976 350 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 ANTXR2P58335 489 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 RTN4Q9NQC3 1192 aaKnown RBP17.11■□□□□ 0.33
VRK3-217ENST00000599538 RTCBQ9Y3I0 505 aaKnown RBP17.11■□□□□ 0.33
VRK3-217ENST00000599538 SBF2Q86WG5 1849 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 ZNF213O14771 459 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 PHF14O94880 888 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 SLC10A5Q5PT55 438 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 MB21D2Q8IYB1 491 aaPredicted RBP17.11■□□□□ 0.33
VRK3-217ENST00000599538 SEPT12Q8IYM1 358 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 NSUN7Q8NE18 718 aaKnown RBP17.11■□□□□ 0.33
VRK3-217ENST00000599538 STRBPQ96SI9 672 aaKnown RBP17.11■□□□□ 0.33
VRK3-217ENST00000599538 SETDB2Q96T68 719 aa17.11■□□□□ 0.33
VRK3-217ENST00000599538 NAP1L2Q9ULW6 460 aaPredicted RBP17.11■□□□□ 0.33
VRK3-217ENST00000599538 TAF1LQ8IZX4 1826 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 DOCK2Q92608 1830 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 ZPR1O75312 459 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 APPP05067 770 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 PDIA3P30101 505 aaKnown RBP17.1■□□□□ 0.33
VRK3-217ENST00000599538 TBC1D10CQ8IV04 446 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 LRRC4BQ9NT99 713 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 MINPP1Q9UNW1 487 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 ATP6V1DQ9Y5K8 247 aa17.1■□□□□ 0.33
VRK3-217ENST00000599538 PDCP20941 246 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 SLC51AQ86UW1 340 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 NBPF5PQ86XG9 351 aaPredicted RBP17.09■□□□□ 0.33
VRK3-217ENST00000599538 SMARCC2Q8TAQ2 1214 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 RBSNQ9H1K0 784 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 INCENPQ9NQS7 918 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 BSDC1Q9NW68 430 aaPredicted RBP17.09■□□□□ 0.33
VRK3-217ENST00000599538 A0A1B0GUL6 1792 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 PRC1O43663 620 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 ONECUT3O60422 494 aaPredicted RBP17.09■□□□□ 0.33
VRK3-217ENST00000599538 AIDAQ96BJ3 306 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 ARMT1Q9H993 441 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 EPB41L4AQ9HCS5 686 aaPredicted RBP17.09■□□□□ 0.33
VRK3-217ENST00000599538 LY75O60449 1722 aa17.09■□□□□ 0.33
VRK3-217ENST00000599538 MBD4O95243 580 aa17.08■□□□□ 0.33
VRK3-217ENST00000599538 KLRK1P26718 216 aa17.08■□□□□ 0.33
VRK3-217ENST00000599538 FOSBP53539 338 aa17.08■□□□□ 0.33
VRK3-217ENST00000599538 MAP3K12Q12852 859 aa17.08■□□□□ 0.33
VRK3-217ENST00000599538 RAB11FIP4Q86YS3 637 aa17.08■□□□□ 0.33
VRK3-217ENST00000599538 PTPDC1A2A3K4 754 aa17.08■□□□□ 0.32
VRK3-217ENST00000599538 PRKAB2O43741 272 aa17.08■□□□□ 0.32
VRK3-217ENST00000599538 FAM196AQ6ZSG2 479 aa17.08■□□□□ 0.32
VRK3-217ENST00000599538 COL1A1P02452 1464 aaPredicted RBP17.07■□□□□ 0.32
VRK3-217ENST00000599538 TTC6Q86TZ1 520 aa17.07■□□□□ 0.32
VRK3-217ENST00000599538 NCOA7Q8NI08 942 aa17.07■□□□□ 0.32
VRK3-217ENST00000599538 TACC3Q9Y6A5 838 aa17.07■□□□□ 0.32
VRK3-217ENST00000599538 COL24A1Q17RW2 1714 aa17.07■□□□□ 0.32
VRK3-217ENST00000599538 ZNF804BA4D1E1 1349 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms