RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 UBE4AQ14139 1066 aa12.33□□□□□ -0.44
VRK3-216ENST00000599342 MOB2Q70IA6 237 aa12.33□□□□□ -0.44
VRK3-216ENST00000599342 ARMC9Q7Z3E5 817 aa12.33□□□□□ -0.44
VRK3-216ENST00000599342 CERS5Q8N5B7 392 aa12.33□□□□□ -0.44
VRK3-216ENST00000599342 MROH5Q6ZUA9 1318 aa12.33□□□□□ -0.44
VRK3-216ENST00000599342 COL1A1P02452 1464 aaPredicted RBP12.33□□□□□ -0.44
VRK3-216ENST00000599342 UBE2Q2LH0YL09 131 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 TRPA1O75762 1119 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 RBM5P52756 815 aaKnown RBP eCLIP12.32□□□□□ -0.44
VRK3-216ENST00000599342 ALDH1L2Q3SY69 923 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 RABL6Q3YEC7 729 aaPredicted RBP12.32□□□□□ -0.44
VRK3-216ENST00000599342 SSH1Q8WYL5 1049 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 KAZALD1Q96I82 304 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 ZBED3Q96IU2 234 aaPredicted RBP12.32□□□□□ -0.44
VRK3-216ENST00000599342 CSRNP1Q96S65 589 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 SMC4Q9NTJ3 1288 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 RNF186Q9NXI6 227 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 JAG2Q9Y219 1238 aa12.32□□□□□ -0.44
VRK3-216ENST00000599342 CCDC85CA6NKD9 419 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 HIBADHP31937 336 aaKnown RBP12.31□□□□□ -0.44
VRK3-216ENST00000599342 DGKZQ13574 1117 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 PRKG1Q13976 671 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 CFAP100Q494V2 611 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 METTL24Q5JXM2 366 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 VPS37DQ86XT2 251 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 MTMR14Q8NCE2 650 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 PUS3Q9BZE2 481 aaKnown RBP12.31□□□□□ -0.44
VRK3-216ENST00000599342 DEFB129Q9H1M3 183 aa12.31□□□□□ -0.44
VRK3-216ENST00000599342 CLRN2A0PK11 232 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 SPDYE2BA6NHP3 402 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 SPDYE6P0CI01 402 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 GYG1P46976 350 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 MFSD14BQ5SR56 506 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 ANKRD44Q8N8A2 993 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 TDRD7Q8NHU6 1098 aaKnown RBP12.3□□□□□ -0.44
VRK3-216ENST00000599342 CDCA7LQ96GN5 454 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 MCOLN1Q9GZU1 580 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 VEZTQ9HBM0 779 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 RIPOR2Q9Y4F9 1068 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 PPP2R3BQ9Y5P8 575 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 FAM205AQ6ZU69 1335 aa12.3□□□□□ -0.44
VRK3-216ENST00000599342 FRAT2O75474 233 aaPredicted RBP12.29□□□□□ -0.44
VRK3-216ENST00000599342 CT47B1P0C2W7 299 aaPredicted RBP12.29□□□□□ -0.44
VRK3-216ENST00000599342 LRRC24Q50LG9 513 aa12.29□□□□□ -0.44
VRK3-216ENST00000599342 CAVIN4Q5BKX8 364 aa12.29□□□□□ -0.44
VRK3-216ENST00000599342 FAM84BQ96KN1 310 aaPredicted RBP12.29□□□□□ -0.44
VRK3-216ENST00000599342 ANGEL1Q9UNK9 670 aaKnown RBP12.29□□□□□ -0.44
VRK3-216ENST00000599342 TTF2Q9UNY4 1162 aaKnown RBP12.29□□□□□ -0.44
VRK3-216ENST00000599342 CCER2I3L3R5 266 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 PPP1R12BO60237 982 aaPredicted RBP12.28□□□□□ -0.44
VRK3-216ENST00000599342 PTPN12Q05209 780 aaKnown RBP12.28□□□□□ -0.44
VRK3-216ENST00000599342 SREBF2Q12772 1141 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 MKRN3Q13064 507 aaKnown RBP12.28□□□□□ -0.44
VRK3-216ENST00000599342 TNFAIP1Q13829 316 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 SUPT20HL1Q3ZLR7 823 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 PRMT6Q96LA8 375 aaPredicted RBP12.28□□□□□ -0.44
VRK3-216ENST00000599342 USP44Q9H0E7 712 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 PCDHAC2Q9Y5I4 1007 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 AKAP11Q9UKA4 1901 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 CASP8AP2Q9UKL3 1982 aa12.28□□□□□ -0.44
VRK3-216ENST00000599342 ECM29Q5VYK3 1845 aa12.27□□□□□ -0.44
VRK3-216ENST00000599342 PDE8BO95263 885 aa12.27□□□□□ -0.45
VRK3-216ENST00000599342 IFIT1P09914 478 aaKnown RBP12.27□□□□□ -0.45
VRK3-216ENST00000599342 CHAF1AQ13111 956 aaPredicted RBP12.27□□□□□ -0.45
VRK3-216ENST00000599342 KLHDC4Q8TBB5 520 aa12.27□□□□□ -0.45
VRK3-216ENST00000599342 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.27□□□□□ -0.45
VRK3-216ENST00000599342 SERPINA10Q9UK55 444 aa12.27□□□□□ -0.45
VRK3-216ENST00000599342 ARAP2Q8WZ64 1704 aa12.26□□□□□ -0.45
VRK3-216ENST00000599342 UBTFL1P0CB47 393 aaPredicted RBP12.26□□□□□ -0.45
VRK3-216ENST00000599342 PUM3Q15397 648 aaKnown RBP12.26□□□□□ -0.45
VRK3-216ENST00000599342 LDLRAD1Q5T700 205 aa12.26□□□□□ -0.45
VRK3-216ENST00000599342 FBXO33Q7Z6M2 555 aa12.26□□□□□ -0.45
VRK3-216ENST00000599342 TRMT2AQ8IZ69 625 aaKnown RBP12.26□□□□□ -0.45
VRK3-216ENST00000599342 VGLL2Q8N8G2 317 aa12.26□□□□□ -0.45
VRK3-216ENST00000599342 TBC1D22AQ8WUA7 517 aa12.26□□□□□ -0.45
VRK3-216ENST00000599342 FZD1Q9UP38 647 aa12.26□□□□□ -0.45
VRK3-216ENST00000599342 IQSEC3Q9UPP2 1182 aaPredicted RBP12.26□□□□□ -0.45
VRK3-216ENST00000599342 SLC5A1P13866 664 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 CRKP46108 304 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 IREB2P48200 963 aaKnown RBP12.25□□□□□ -0.45
VRK3-216ENST00000599342 TM4SF4P48230 202 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 RASA3Q14644 834 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 MAP3K11Q16584 847 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 SPDYE2Q495Y8 402 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 DZIP1LQ8IYY4 767 aaKnown RBP12.25□□□□□ -0.45
VRK3-216ENST00000599342 SLC10A4Q96EP9 437 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 API5Q9BZZ5 524 aaKnown RBP12.25□□□□□ -0.45
VRK3-216ENST00000599342 TDRD3Q9H7E2 651 aaKnown RBP12.25□□□□□ -0.45
VRK3-216ENST00000599342 ZNF70Q9UC06 446 aaPredicted RBP12.25□□□□□ -0.45
VRK3-216ENST00000599342 NOB1Q9ULX3 412 aaKnown RBP12.25□□□□□ -0.45
VRK3-216ENST00000599342 HDAC5Q9UQL6 1122 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 KIF16BQ96L93 1317 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 SSC5DA1L4H1 1573 aa12.25□□□□□ -0.45
VRK3-216ENST00000599342 MANSC4A6NHS7 340 aaPredicted RBP12.24□□□□□ -0.45
VRK3-216ENST00000599342 UNCXA6NJT0 531 aa12.24□□□□□ -0.45
VRK3-216ENST00000599342 EYA2O00167 538 aa12.24□□□□□ -0.45
VRK3-216ENST00000599342 TBC1D8O95759 1140 aa12.24□□□□□ -0.45
VRK3-216ENST00000599342 TNNI2P48788 182 aa12.24□□□□□ -0.45
VRK3-216ENST00000599342 BCAMP50895 628 aa12.24□□□□□ -0.45
VRK3-216ENST00000599342 AOX1Q06278 1338 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms