RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ZBED3Q96IU2 234 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-218ENST00000598907 CCL15-CCL14A0A0B4J2E2 113 aa17.84■□□□□ 0.45
SHKBP1-218ENST00000598907 CCL15Q16663 113 aa17.84■□□□□ 0.45
SHKBP1-218ENST00000598907 ANKRD13AQ8IZ07 590 aa17.84■□□□□ 0.45
SHKBP1-218ENST00000598907 ZBTB38Q8NAP3 1195 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-218ENST00000598907 CNKSR2Q8WXI2 1034 aa17.84■□□□□ 0.45
SHKBP1-218ENST00000598907 NR2E3Q9Y5X4 410 aa17.84■□□□□ 0.45
SHKBP1-218ENST00000598907 ZBTB7BO15156 539 aaPredicted RBP17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 GTF2IP78347 998 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 HNRNPUQ00839 825 aaKnown RBP eCLIP17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 CCDC27Q2M243 656 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 SUPT20HL1Q3ZLR7 823 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 TTLL5Q6EMB2 1281 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 TXNRD3Q86VQ6 643 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 FAM43AQ8N2R8 423 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 COA1Q9GZY4 146 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 PPP2R3BQ9Y5P8 575 aa17.83■□□□□ 0.44
SHKBP1-218ENST00000598907 F8W031 263 aaPredicted RBP17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 PDE8AO60658 829 aa17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 USP2O75604 605 aaPredicted RBP17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 HSP90B1P14625 803 aaKnown RBP17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 KLRK1P26718 216 aa17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 CCT4P50991 539 aaKnown RBP17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 KIF22Q14807 665 aa17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 COL25A1Q9BXS0 654 aaPredicted RBP17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 LAMA3Q16787 3333 aa17.82■□□□□ 0.44
SHKBP1-218ENST00000598907 ZNF804BA4D1E1 1349 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 ZNF521Q96K83 1311 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 RIPK4P57078 832 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 Q7L0L9 218 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 RIC3Q7Z5B4 369 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 MS4A4AQ96JQ5 239 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 MYD88Q99836 296 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 TRIM35Q9UPQ4 493 aa17.81■□□□□ 0.44
SHKBP1-218ENST00000598907 AOX1Q06278 1338 aa17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 A0A1W2PPC1 479 aa17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 UNCXA6NJT0 531 aa17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 LACTBP83111 547 aaPredicted RBP17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 TRIM28Q13263 835 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 CDC5LQ99459 802 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 MINPP1Q9UNW1 487 aa17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 LAS1LQ9Y4W2 734 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-218ENST00000598907 ZBED9Q6R2W3 1325 aa17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 MYO1BO43795 1136 aa17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 MMP14P50281 582 aa17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 DEFB123Q8N688 67 aa17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 NKX2-3Q8TAU0 364 aa17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 DBF4Q9UBU7 674 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 STAP2Q9UGK3 403 aa17.79■□□□□ 0.44
SHKBP1-218ENST00000598907 FARP2O94887 1054 aaPredicted RBP17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 PCCAP05165 728 aaPredicted RBP17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 CCL5P13501 91 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 GOLGA2Q08379 1002 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 RASA3Q14644 834 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 NEUROD2Q15784 382 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 CFAP100Q494V2 611 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 UBE2Q1Q7Z7E8 422 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 WWC1Q8IX03 1113 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 BABAM1Q9NWV8 329 aa17.78■□□□□ 0.44
SHKBP1-218ENST00000598907 EVI5O60447 810 aa17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 WDHD1O75717 1129 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 GJA8P48165 433 aa17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 GTF2A2P52657 109 aa17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 CTSWP56202 376 aa17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 CERS5Q8N5B7 392 aa17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 YTHDC1Q96MU7 727 aaKnown RBP17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 HYPKQ9NX55 129 aa17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 BIN2Q9UBW5 565 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-218ENST00000598907 SPDYE2BA6NHP3 402 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 TLR2O60603 784 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 SPDYE6P0CI01 402 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 RBM5P52756 815 aaKnown RBP eCLIP17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 LMOD3Q0VAK6 560 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 VGLL4Q14135 290 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 CDAN1Q8IWY9 1227 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 RAET1EQ8TD07 263 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 RNF208Q9H0X6 261 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 GREM2Q9H772 168 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 BSDC1Q9NW68 430 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 SALL2Q9Y467 1007 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 UNC80Q8N2C7 3258 aa17.76■□□□□ 0.43
SHKBP1-218ENST00000598907 GJB1P08034 283 aa17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 GRK4P32298 578 aa17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 PRMT6Q96LA8 375 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 CWC25Q9NXE8 425 aaPredicted RBP17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 JAG2Q9Y219 1238 aa17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 STXBP5LQ9Y2K9 1186 aa17.75■□□□□ 0.43
SHKBP1-218ENST00000598907 CTGFP29279 349 aa17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 PRMT2P55345 433 aa17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 WDR63Q8IWG1 891 aa17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 MTMR14Q8NCE2 650 aa17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 CCDC191Q8NCU4 936 aa17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 U2AF1L4Q8WU68 220 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 RIPOR2Q9Y4F9 1068 aa17.74■□□□□ 0.43
SHKBP1-218ENST00000598907 MYH3P11055 1940 aa17.73■□□□□ 0.43
SHKBP1-218ENST00000598907 GNRH1P01148 92 aa17.73■□□□□ 0.43
SHKBP1-218ENST00000598907 PSMC4P43686 418 aa17.73■□□□□ 0.43
SHKBP1-218ENST00000598907 KCNJ4P48050 445 aa17.73■□□□□ 0.43
SHKBP1-218ENST00000598907 TRIM47Q96LD4 638 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms