RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TBC1D10BQ4KMP7 808 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 TNNI3KQ59H18 835 aa17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 RBM26Q5T8P6 1007 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 CCDC102BQ68D86 513 aa17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 VPS37DQ86XT2 251 aa17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 C16orf71Q8IYS4 520 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 GPR108Q9NPR9 543 aa17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 TLR7Q9NYK1 1049 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 FPGT-TNNI3KV9GXZ4 949 aa17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 ZNF646O15015 1829 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 COL1A1P02452 1464 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 ASTN2O75129 1339 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 H7C1D1 291 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 APBB1O00213 710 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 USP17L8P0C7I0 530 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 USP50Q70EL3 339 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 KIAA0825Q8IV33 1275 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 RHPN1Q8TCX5 695 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 DBNDD2Q9BQY9 259 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 CCDC8Q9H0W5 538 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 PCDHAC2Q9Y5I4 1007 aa17.55■□□□□ 0.4
SHKBP1-217ENST00000598558 HMMRO75330 724 aa17.54■□□□□ 0.4
SHKBP1-217ENST00000598558 PNMA8AQ86V59 439 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-217ENST00000598558 IL1RAPL2Q9NP60 686 aa17.54■□□□□ 0.4
SHKBP1-217ENST00000598558 F8W031 263 aaPredicted RBP17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 FKBP1AP62942 108 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 FMR1Q06787 632 aaKnown RBP eCLIP17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 SCARF1Q14162 830 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 MFSD14BQ5SR56 506 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 MAP1SQ66K74 1059 aaPredicted RBP17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 CHADLQ6NUI6 762 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 LDHDQ86WU2 507 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 DCTPP1Q9H773 170 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 PGAP2Q9UHJ9 254 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 DBNLQ9UJU6 430 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 CLEC11AQ9Y240 323 aa17.53■□□□□ 0.4
SHKBP1-217ENST00000598558 SCN4AP35499 1836 aa17.52■□□□□ 0.4
SHKBP1-217ENST00000598558 FRAT2O75474 233 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-217ENST00000598558 ITGBL1O95965 494 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-217ENST00000598558 RASGRF1Q13972 1273 aa17.52■□□□□ 0.4
SHKBP1-217ENST00000598558 DLK2Q6UY11 383 aa17.52■□□□□ 0.4
SHKBP1-217ENST00000598558 MYOZ2Q9NPC6 264 aa17.52■□□□□ 0.4
SHKBP1-217ENST00000598558 AOX1Q06278 1338 aa17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 MYO3BQ8WXR4 1341 aa17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 ADAMTSL1Q8N6G6 1762 aa17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 SMARCA5O60264 1052 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 KIF4BQ2VIQ3 1234 aa17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 PI16Q6UXB8 463 aa17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 SMC1BQ8NDV3 1235 aa17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 ZBED3Q96IU2 234 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-217ENST00000598558 PSME4Q14997 1843 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 ZBTB22O15209 634 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 RAB11FIP3O75154 756 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 FSTL1Q12841 308 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 NBPF9Q3BBW0 867 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 HSP90AB4PQ58FF6 505 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 ERC1Q8IUD2 1116 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 KIF1BPQ96EK5 621 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 HMG20BQ9P0W2 317 aa17.5■□□□□ 0.39
SHKBP1-217ENST00000598558 ARID4AP29374 1257 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-217ENST00000598558 AACSQ86V21 672 aa17.49■□□□□ 0.39
SHKBP1-217ENST00000598558 CNTROBQ8N137 903 aa17.49■□□□□ 0.39
SHKBP1-217ENST00000598558 BCL11AQ9H165 835 aa17.49■□□□□ 0.39
SHKBP1-217ENST00000598558 GNL3LQ9NVN8 582 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-217ENST00000598558 SCAF8Q9UPN6 1271 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-217ENST00000598558 WNT10BO00744 389 aa17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 MCAMP43121 646 aa17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 GORABQ5T7V8 394 aa17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 GLIS2Q9BZE0 524 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 SNRKQ9NRH2 765 aa17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 DENND2AQ9ULE3 1009 aa17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 TTF2Q9UNY4 1162 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-217ENST00000598558 TRAF5O00463 557 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 SEMA3EO15041 775 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 IGHDP01880 384 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 PRDX5P30044 214 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 CFAP100Q494V2 611 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 TBC1D9Q6ZT07 1266 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 OGFOD1Q8N543 542 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 WDR66Q8TBY9 1149 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 ZC3H15Q8WU90 426 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 PRMT6Q96LA8 375 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 PASKQ96RG2 1323 aa17.47■□□□□ 0.39
SHKBP1-217ENST00000598558 USP48Q86UV5 1035 aa17.46■□□□□ 0.39
SHKBP1-217ENST00000598558 SPATA5Q8NB90 893 aa17.46■□□□□ 0.39
SHKBP1-217ENST00000598558 MTMR14Q8NCE2 650 aa17.46■□□□□ 0.39
SHKBP1-217ENST00000598558 TBC1D22AQ8WUA7 517 aa17.46■□□□□ 0.39
SHKBP1-217ENST00000598558 NDUFB9Q9Y6M9 179 aa17.46■□□□□ 0.39
SHKBP1-217ENST00000598558 ARAP2Q8WZ64 1704 aa17.46■□□□□ 0.39
SHKBP1-217ENST00000598558 HTRA3P83110 453 aa17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 HDAC1Q13547 482 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 TTC39AQ5SRH9 613 aa17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 ANGEL2Q5VTE6 544 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 CLASRPQ8N2M8 674 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 ZNF384Q8TF68 577 aa17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 LRRCC1Q9C099 1032 aa17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 GGA3Q9NZ52 723 aa17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 HDAC9Q9UKV0 1011 aa17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 PDS5AQ29RF7 1337 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-217ENST00000598558 SALL1Q9NSC2 1324 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms