RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 DCAF8Q5TAQ9 597 aa18.68■□□□□ 0.58
UPF1-206ENST00000598471 PI16Q6UXB8 463 aa18.68■□□□□ 0.58
UPF1-206ENST00000598471 TXNRD3Q86VQ6 643 aa18.68■□□□□ 0.58
UPF1-206ENST00000598471 GPR101Q96P66 508 aaPredicted RBP18.68■□□□□ 0.58
UPF1-206ENST00000598471 COA1Q9GZY4 146 aa18.68■□□□□ 0.58
UPF1-206ENST00000598471 DCAF8L1A6NGE4 600 aa18.67■□□□□ 0.58
UPF1-206ENST00000598471 CYP2E1P05181 493 aaPredicted RBP18.67■□□□□ 0.58
UPF1-206ENST00000598471 IQSEC3Q9UPP2 1182 aaPredicted RBP18.67■□□□□ 0.58
UPF1-206ENST00000598471 BCS1LQ9Y276 419 aa18.67■□□□□ 0.58
UPF1-206ENST00000598471 AKAP11Q9UKA4 1901 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 RIMBP2O15034 1052 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 REC8O95072 547 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 ZGPATQ8N5A5 531 aaKnown RBP18.66■□□□□ 0.58
UPF1-206ENST00000598471 TDRD7Q8NHU6 1098 aaKnown RBP18.66■□□□□ 0.58
UPF1-206ENST00000598471 PSMD1Q99460 953 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 ESYT1Q9BSJ8 1104 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 ANTXR1Q9H6X2 564 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 CD209Q9NNX6 404 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 RAD50Q92878 1312 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 SNED1Q8TER0 1413 aa18.66■□□□□ 0.58
UPF1-206ENST00000598471 IL1R1P14778 569 aa18.65■□□□□ 0.58
UPF1-206ENST00000598471 MFAP1P55081 439 aaKnown RBP18.65■□□□□ 0.58
UPF1-206ENST00000598471 MAP3K12Q12852 859 aa18.65■□□□□ 0.58
UPF1-206ENST00000598471 CHAF1AQ13111 956 aaPredicted RBP18.65■□□□□ 0.58
UPF1-206ENST00000598471 WDR66Q8TBY9 1149 aa18.65■□□□□ 0.58
UPF1-206ENST00000598471 BRCA1P38398 1863 aaKnown RBP18.65■□□□□ 0.58
UPF1-206ENST00000598471 RNF113AO15541 343 aaKnown RBP18.64■□□□□ 0.57
UPF1-206ENST00000598471 IGSF3O75054 1194 aa18.64■□□□□ 0.57
UPF1-206ENST00000598471 IDH1O75874 414 aaKnown RBP18.64■□□□□ 0.57
UPF1-206ENST00000598471 NMIQ13287 307 aaPredicted RBP18.64■□□□□ 0.57
UPF1-206ENST00000598471 CWC27Q6UX04 472 aaKnown RBP18.64■□□□□ 0.57
UPF1-206ENST00000598471 PIH1D3Q9NQM4 214 aaKnown RBP18.64■□□□□ 0.57
UPF1-206ENST00000598471 LRP2BPQ9P2M1 347 aa18.64■□□□□ 0.57
UPF1-206ENST00000598471 MYH13Q9UKX3 1938 aa18.64■□□□□ 0.57
UPF1-206ENST00000598471 COL1A1P02452 1464 aaPredicted RBP18.64■□□□□ 0.57
UPF1-206ENST00000598471 KIAA2012Q0VF49 1180 aa18.63■□□□□ 0.57
UPF1-206ENST00000598471 SPTY2D1Q68D10 685 aaPredicted RBP18.63■□□□□ 0.57
UPF1-206ENST00000598471 VPS33BQ9H267 617 aa18.63■□□□□ 0.57
UPF1-206ENST00000598471 ABCF2Q9UG63 623 aa18.63■□□□□ 0.57
UPF1-206ENST00000598471 SGSM2O43147 1006 aa18.62■□□□□ 0.57
UPF1-206ENST00000598471 PPIP5K2O43314 1243 aa18.62■□□□□ 0.57
UPF1-206ENST00000598471 TMED8Q6PL24 325 aaPredicted RBP18.62■□□□□ 0.57
UPF1-206ENST00000598471 KIAA1211Q6ZU35 1233 aa18.62■□□□□ 0.57
UPF1-206ENST00000598471 TBC1D22AQ8WUA7 517 aa18.62■□□□□ 0.57
UPF1-206ENST00000598471 HELLSQ9NRZ9 838 aa18.62■□□□□ 0.57
UPF1-206ENST00000598471 SALL1Q9NSC2 1324 aa18.62■□□□□ 0.57
UPF1-206ENST00000598471 GRIN3BO60391 1043 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 SEC24BO95487 1268 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 UBE3CQ15386 1083 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 ZMYM1Q5SVZ6 1142 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 SLC9C2Q5TAH2 1124 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 ERICH6Q7L0X2 663 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 PODNQ7Z5L7 613 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 FAM227BQ96M60 508 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 TSHZ2Q9NRE2 1034 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 RAI14Q9P0K7 980 aa18.61■□□□□ 0.57
UPF1-206ENST00000598471 FAM205AQ6ZU69 1335 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 A0A0D9SFI3 127 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 EPB41L2O43491 1005 aaKnown RBP18.6■□□□□ 0.57
UPF1-206ENST00000598471 ADD2P35612 726 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 AOC3Q16853 763 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 DOK7Q18PE1 504 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 MCMDC2Q4G0Z9 681 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 ARHGAP27Q6ZUM4 889 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 APPBP2Q92624 585 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 TAOK3Q9H2K8 898 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 ANO2Q9NQ90 1003 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 DOCK2Q92608 1830 aa18.6■□□□□ 0.57
UPF1-206ENST00000598471 PDE6AP16499 860 aa18.59■□□□□ 0.57
UPF1-206ENST00000598471 ECE2O60344 883 aa18.58■□□□□ 0.56
UPF1-206ENST00000598471 LDHBP07195 334 aaKnown RBP18.58■□□□□ 0.56
UPF1-206ENST00000598471 LARGE2Q8N3Y3 721 aa18.58■□□□□ 0.56
UPF1-206ENST00000598471 MAGEB6Q8N7X4 407 aa18.58■□□□□ 0.56
UPF1-206ENST00000598471 FBXW7Q969H0 707 aa18.58■□□□□ 0.56
UPF1-206ENST00000598471 DBNDD1Q9H9R9 158 aa18.58■□□□□ 0.56
UPF1-206ENST00000598471 MYH7P12883 1935 aa18.58■□□□□ 0.56
UPF1-206ENST00000598471 ZNF532Q9HCE3 1301 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 LTBP3Q9NS15 1303 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 MCCP23508 829 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 IARSP41252 1262 aaKnown RBP18.57■□□□□ 0.56
UPF1-206ENST00000598471 GTF2IP78347 998 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 DZIP1Q86YF9 867 aaKnown RBP18.57■□□□□ 0.56
UPF1-206ENST00000598471 ZNF277Q9NRM2 450 aaPredicted RBP18.57■□□□□ 0.56
UPF1-206ENST00000598471 JAG2Q9Y219 1238 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 ARFGEF1Q9Y6D6 1849 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 MAST2Q6P0Q8 1798 aa18.57■□□□□ 0.56
UPF1-206ENST00000598471 MAST3O60307 1309 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 CCDC171Q6TFL3 1326 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 GSTO1P78417 241 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 MFSD14BQ5SR56 506 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 TTLL5Q6EMB2 1281 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 NAA16Q6N069 864 aaPredicted RBP18.56■□□□□ 0.56
UPF1-206ENST00000598471 C22orf23Q9BZE7 217 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 SUGT1Q9Y2Z0 365 aa18.56■□□□□ 0.56
UPF1-206ENST00000598471 CYP7A1P22680 504 aa18.55■□□□□ 0.56
UPF1-206ENST00000598471 STRIP1Q5VSL9 837 aa18.55■□□□□ 0.56
UPF1-206ENST00000598471 NIM1KQ8IY84 436 aa18.55■□□□□ 0.56
UPF1-206ENST00000598471 FER1L6Q2WGJ9 1857 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 TCRBV5S4A2TA0A5A2 114 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 USP17L3A6NCW0 530 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms