RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 CCDC184Q52MB2 194 aa21.03■□□□□ 0.96
SHKBP1-215ENST00000597649 IFNL1Q8IU54 200 aa21.03■□□□□ 0.96
SHKBP1-215ENST00000597649 SSC5DA1L4H1 1573 aa21.02■□□□□ 0.96
SHKBP1-215ENST00000597649 IGF2BP3O00425 579 aaKnown RBP eCLIP21.02■□□□□ 0.96
SHKBP1-215ENST00000597649 KCNJ4P48050 445 aa21.02■□□□□ 0.96
SHKBP1-215ENST00000597649 C15orf52Q6ZUT6 534 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-215ENST00000597649 WWC1Q8IX03 1113 aa21.02■□□□□ 0.96
SHKBP1-215ENST00000597649 PRMT6Q96LA8 375 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-215ENST00000597649 MANSC4A6NHS7 340 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 F8W031 263 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 ALDH1A1P00352 501 aa21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 INHBEP58166 350 aa21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 FOXO4P98177 505 aa21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 LINS1Q8NG48 757 aa21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 DNAAF4Q8WXU2 420 aa21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 WNK4Q96J92 1243 aa21.01■□□□□ 0.95
SHKBP1-215ENST00000597649 CLRN2A0PK11 232 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 ANKRD18BA2A2Z9 1011 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 IL1R1P14778 569 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 GJA5P36382 358 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 CCDC27Q2M243 656 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 CFAP100Q494V2 611 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 NBPF12Q5TAG4 269 aaPredicted RBP21■□□□□ 0.95
SHKBP1-215ENST00000597649 OTOP1Q7RTM1 612 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 TRIM17Q9Y577 477 aa21■□□□□ 0.95
SHKBP1-215ENST00000597649 SPDYE2BA6NHP3 402 aa20.99■□□□□ 0.95
SHKBP1-215ENST00000597649 SPDYE6P0CI01 402 aa20.99■□□□□ 0.95
SHKBP1-215ENST00000597649 FKBP5Q13451 457 aaPredicted RBP20.99■□□□□ 0.95
SHKBP1-215ENST00000597649 MYH16Q9H6N6 1097 aa20.99■□□□□ 0.95
SHKBP1-215ENST00000597649 JAG2Q9Y219 1238 aa20.99■□□□□ 0.95
SHKBP1-215ENST00000597649 POTEFA5A3E0 1075 aa20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 PPP1R12BO60237 982 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 USP2O75604 605 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 ZBTB48P10074 688 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 CAP1Q01518 475 aa20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 PTPN18Q99952 460 aa20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 PPP2R3BQ9Y5P8 575 aa20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 COL1A1P02452 1464 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-215ENST00000597649 EPHA10Q5JZY3 1008 aa20.97■□□□□ 0.95
SHKBP1-215ENST00000597649 KIAA0100Q14667 2235 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-215ENST00000597649 VAMP4O75379 141 aa20.96■□□□□ 0.95
SHKBP1-215ENST00000597649 FKBP1AP62942 108 aaKnown RBP20.96■□□□□ 0.95
SHKBP1-215ENST00000597649 IFIT5Q13325 482 aaKnown RBP20.96■□□□□ 0.95
SHKBP1-215ENST00000597649 SUPT20HL1Q3ZLR7 823 aa20.96■□□□□ 0.95
SHKBP1-215ENST00000597649 ZNF594Q96JF6 807 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-215ENST00000597649 VEZTQ9HBM0 779 aa20.96■□□□□ 0.95
SHKBP1-215ENST00000597649 UNCXA6NJT0 531 aa20.95■□□□□ 0.94
SHKBP1-215ENST00000597649 F6X3S4 739 aa20.95■□□□□ 0.94
SHKBP1-215ENST00000597649 CRHR2Q13324 411 aa20.95■□□□□ 0.94
SHKBP1-215ENST00000597649 RASA3Q14644 834 aa20.95■□□□□ 0.94
SHKBP1-215ENST00000597649 CD99L2Q8TCZ2 262 aa20.95■□□□□ 0.94
SHKBP1-215ENST00000597649 IL16Q14005 1332 aa20.95■□□□□ 0.94
SHKBP1-215ENST00000597649 BEND3Q5T5X7 828 aa20.94■□□□□ 0.94
SHKBP1-215ENST00000597649 LMBR1LQ6UX01 489 aa20.94■□□□□ 0.94
SHKBP1-215ENST00000597649 ZNF804AQ7Z570 1209 aa20.94■□□□□ 0.94
SHKBP1-215ENST00000597649 MRS2Q9HD23 443 aa20.94■□□□□ 0.94
SHKBP1-215ENST00000597649 PTPN22Q9Y2R2 807 aa20.94■□□□□ 0.94
SHKBP1-215ENST00000597649 CHMP3Q9Y3E7 222 aa20.94■□□□□ 0.94
SHKBP1-215ENST00000597649 TESPA1A2RU30 521 aaPredicted RBP20.93■□□□□ 0.94
SHKBP1-215ENST00000597649 MYO1BO43795 1136 aa20.93■□□□□ 0.94
SHKBP1-215ENST00000597649 PLIN1O60240 522 aa20.93■□□□□ 0.94
SHKBP1-215ENST00000597649 CDAN1Q8IWY9 1227 aa20.93■□□□□ 0.94
SHKBP1-215ENST00000597649 FANCIQ9NVI1 1328 aa20.93■□□□□ 0.94
SHKBP1-215ENST00000597649 IREB2P48200 963 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-215ENST00000597649 RBM5P52756 815 aaKnown RBP eCLIP20.91■□□□□ 0.94
SHKBP1-215ENST00000597649 INTS3Q68E01 1043 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-215ENST00000597649 LDHAL6AQ6ZMR3 332 aa20.91■□□□□ 0.94
SHKBP1-215ENST00000597649 FAM205AQ6ZU69 1335 aa20.91■□□□□ 0.94
SHKBP1-215ENST00000597649 ANKRD13AQ8IZ07 590 aa20.91■□□□□ 0.94
SHKBP1-215ENST00000597649 ERO1AQ96HE7 468 aa20.91■□□□□ 0.94
SHKBP1-215ENST00000597649 SPDYE2Q495Y8 402 aa20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 MIER1Q8N108 512 aa20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 TDRD7Q8NHU6 1098 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 CNKSR2Q8WXI2 1034 aa20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 MS4A4AQ96JQ5 239 aa20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 TEPSINQ96N21 525 aa20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 ELP3Q9H9T3 547 aa20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 ZNF70Q9UC06 446 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-215ENST00000597649 EN2P19622 333 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 SP3Q02447 781 aa20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 EXOSC9Q06265 439 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 OTUD7BQ6GQQ9 843 aa20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 ARMC5Q96C12 935 aa20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 OPTNQ96CV9 577 aa20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 TDRD3Q9H7E2 651 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 EFCC1Q9HA90 598 aa20.89■□□□□ 0.93
SHKBP1-215ENST00000597649 GYG1P46976 350 aa20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 CCDC57Q2TAC2 916 aa20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 NCBP3Q53F19 620 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 HABP4Q5JVS0 413 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 MFSD14BQ5SR56 506 aa20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 FAM84BQ96KN1 310 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 CNNM1Q9NRU3 951 aa20.88■□□□□ 0.93
SHKBP1-215ENST00000597649 GRM8O00222 908 aa20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 GRIK5Q16478 980 aa20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 DZIP1LQ8IYY4 767 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 BRI3BPQ8WY22 251 aa20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 PUS3Q9BZE2 481 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 SPINK5Q9NQ38 1064 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms