RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TDRD7Q8NHU6 1098 aaKnown RBP13.24□□□□□ -0.29
LIG1-213ENST00000596672 CNNM1Q9NRU3 951 aa13.24□□□□□ -0.29
LIG1-213ENST00000596672 SMC4Q9NTJ3 1288 aa13.24□□□□□ -0.29
LIG1-213ENST00000596672 SSC5DA1L4H1 1573 aa13.24□□□□□ -0.29
LIG1-213ENST00000596672 PITPNM2Q9BZ72 1349 aa13.23□□□□□ -0.29
LIG1-213ENST00000596672 UBE2Q2LH0YL09 131 aa13.23□□□□□ -0.29
LIG1-213ENST00000596672 KIF23Q02241 960 aaPredicted RBP13.23□□□□□ -0.29
LIG1-213ENST00000596672 FBXO33Q7Z6M2 555 aa13.23□□□□□ -0.29
LIG1-213ENST00000596672 PRMT6Q96LA8 375 aaPredicted RBP13.23□□□□□ -0.29
LIG1-213ENST00000596672 ECM29Q5VYK3 1845 aa13.23□□□□□ -0.29
LIG1-213ENST00000596672 FAM205AQ6ZU69 1335 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 F8W031 263 aaPredicted RBP13.22□□□□□ -0.29
LIG1-213ENST00000596672 SLC10A3P09131 477 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 FGFR2P21802 821 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 BRPF1P55201 1214 aaPredicted RBP13.22□□□□□ -0.29
LIG1-213ENST00000596672 PTPN12Q05209 780 aaKnown RBP13.22□□□□□ -0.29
LIG1-213ENST00000596672 UBE4AQ14139 1066 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 ATG9AQ7Z3C6 839 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 RASAL3Q86YV0 1011 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 C2orf69Q8N8R5 385 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 AIDAQ96BJ3 306 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 IQSEC3Q9UPP2 1182 aaPredicted RBP13.22□□□□□ -0.29
LIG1-213ENST00000596672 PAPPA2Q9BXP8 1791 aa13.22□□□□□ -0.29
LIG1-213ENST00000596672 MYO3BQ8WXR4 1341 aa13.21□□□□□ -0.29
LIG1-213ENST00000596672 TAF7LQ5H9L4 462 aa13.21□□□□□ -0.29
LIG1-213ENST00000596672 CDAN1Q8IWY9 1227 aa13.21□□□□□ -0.29
LIG1-213ENST00000596672 MTMR14Q8NCE2 650 aa13.21□□□□□ -0.29
LIG1-213ENST00000596672 CSRNP1Q96S65 589 aa13.21□□□□□ -0.29
LIG1-213ENST00000596672 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.21□□□□□ -0.29
LIG1-213ENST00000596672 ARAP2Q8WZ64 1704 aa13.2□□□□□ -0.3
LIG1-213ENST00000596672 BCAR3O75815 825 aa13.2□□□□□ -0.3
LIG1-213ENST00000596672 BCAMP50895 628 aa13.2□□□□□ -0.3
LIG1-213ENST00000596672 ZNF157P51786 506 aaPredicted RBP13.2□□□□□ -0.3
LIG1-213ENST00000596672 CFAP100Q494V2 611 aa13.2□□□□□ -0.3
LIG1-213ENST00000596672 ZNF804AQ7Z570 1209 aa13.2□□□□□ -0.3
LIG1-213ENST00000596672 MEIS3Q99687 375 aa13.2□□□□□ -0.3
LIG1-213ENST00000596672 COL1A1P02452 1464 aaPredicted RBP13.2□□□□□ -0.3
LIG1-213ENST00000596672 AKAP11Q9UKA4 1901 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 CLRN2A0PK11 232 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 SPDYE2BA6NHP3 402 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 PDE8BO95263 885 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 SPDYE6P0CI01 402 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 HIBADHP31937 336 aaKnown RBP13.19□□□□□ -0.3
LIG1-213ENST00000596672 FKBP1AP62942 108 aaKnown RBP13.19□□□□□ -0.3
LIG1-213ENST00000596672 NOGQ13253 232 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 OGFOD1Q8N543 542 aa13.19□□□□□ -0.3
LIG1-213ENST00000596672 PA2G4Q9UQ80 394 aaKnown RBP13.19□□□□□ -0.3
LIG1-213ENST00000596672 MROH5Q6ZUA9 1318 aa13.18□□□□□ -0.3
LIG1-213ENST00000596672 EYA2O00167 538 aa13.18□□□□□ -0.3
LIG1-213ENST00000596672 PRKG1Q13976 671 aa13.18□□□□□ -0.3
LIG1-213ENST00000596672 RNF186Q9NXI6 227 aa13.18□□□□□ -0.3
LIG1-213ENST00000596672 LRRFIP2Q9Y608 721 aaKnown RBP13.18□□□□□ -0.3
LIG1-213ENST00000596672 CT47B1P0C2W7 299 aaPredicted RBP13.17□□□□□ -0.3
LIG1-213ENST00000596672 DLGAP5Q15398 846 aa13.17□□□□□ -0.3
LIG1-213ENST00000596672 METTL24Q5JXM2 366 aa13.17□□□□□ -0.3
LIG1-213ENST00000596672 MFSD14BQ5SR56 506 aa13.17□□□□□ -0.3
LIG1-213ENST00000596672 LDLRAD1Q5T700 205 aa13.17□□□□□ -0.3
LIG1-213ENST00000596672 NBPF12Q5TAG4 269 aaPredicted RBP13.17□□□□□ -0.3
LIG1-213ENST00000596672 DEFB129Q9H1M3 183 aa13.17□□□□□ -0.3
LIG1-213ENST00000596672 FKBP1BP68106 108 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 INTS3Q68E01 1043 aaKnown RBP13.16□□□□□ -0.3
LIG1-213ENST00000596672 CCDC102AQ96A19 550 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 CLMNQ96JQ2 1002 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 TEPSINQ96N21 525 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 SIL1Q9H173 461 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 R3HDMLQ9H3Y0 253 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 HDAC9Q9UKV0 1011 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 OTOFQ9HC10 1997 aa13.16□□□□□ -0.3
LIG1-213ENST00000596672 TRPA1O75762 1119 aa13.15□□□□□ -0.3
LIG1-213ENST00000596672 TRIM27P14373 513 aa13.15□□□□□ -0.3
LIG1-213ENST00000596672 MKRN3Q13064 507 aaKnown RBP13.15□□□□□ -0.3
LIG1-213ENST00000596672 CHAF1AQ13111 956 aaPredicted RBP13.15□□□□□ -0.3
LIG1-213ENST00000596672 ABHD8Q96I13 439 aa13.15□□□□□ -0.3
LIG1-213ENST00000596672 TDRD3Q9H7E2 651 aaKnown RBP13.15□□□□□ -0.3
LIG1-213ENST00000596672 ZNF70Q9UC06 446 aaPredicted RBP13.15□□□□□ -0.3
LIG1-213ENST00000596672 TTF2Q9UNY4 1162 aaKnown RBP13.15□□□□□ -0.3
LIG1-213ENST00000596672 MYH13Q9UKX3 1938 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 UBTFL1P0CB47 393 aaPredicted RBP13.14□□□□□ -0.31
LIG1-213ENST00000596672 ADORA1P30542 326 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 GJA5P36382 358 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 MMP14P50281 582 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 RASA3Q14644 834 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 SPDYE2Q495Y8 402 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 APOBEC3FQ8IUX4 373 aaKnown RBP13.14□□□□□ -0.31
LIG1-213ENST00000596672 DZIP1LQ8IYY4 767 aaKnown RBP13.14□□□□□ -0.31
LIG1-213ENST00000596672 API5Q9BZZ5 524 aaKnown RBP13.14□□□□□ -0.31
LIG1-213ENST00000596672 HTTP42858 3142 aa13.14□□□□□ -0.31
LIG1-213ENST00000596672 USP2O75604 605 aaPredicted RBP13.13□□□□□ -0.31
LIG1-213ENST00000596672 CRKP46108 304 aa13.13□□□□□ -0.31
LIG1-213ENST00000596672 CACNB3P54284 484 aa13.13□□□□□ -0.31
LIG1-213ENST00000596672 ARHGAP45Q92619 1136 aa13.13□□□□□ -0.31
LIG1-213ENST00000596672 ANGEL1Q9UNK9 670 aaKnown RBP13.13□□□□□ -0.31
LIG1-213ENST00000596672 PHKA1P46020 1223 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 TTLL12Q14166 644 aaPredicted RBP13.12□□□□□ -0.31
LIG1-213ENST00000596672 PUM3Q15397 648 aaKnown RBP13.12□□□□□ -0.31
LIG1-213ENST00000596672 MAP3K11Q16584 847 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 APOBEC3HQ6NTF7 200 aaKnown RBP13.12□□□□□ -0.31
LIG1-213ENST00000596672 CLUAP1Q96AJ1 413 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 BEGAINQ9BUH8 593 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 MCOLN1Q9GZU1 580 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms