RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	RAB11FIP3	O75154	756 aa		28.19	■■■□□ 2.1
PNKP-205	ENST00000595081	CERS5	Q8N5B7	392 aa		28.19	■■■□□ 2.1
PNKP-205	ENST00000595081	AGBL3	Q8NEM8	1001 aa		28.19	■■■□□ 2.1
PNKP-205	ENST00000595081	EAF2	Q96CJ1	260 aa	Predicted RBP	28.19	■■■□□ 2.1
PNKP-205	ENST00000595081	KIF1BP	Q96EK5	621 aa		28.19	■■■□□ 2.1
PNKP-205	ENST00000595081	BCL11A	Q9H165	835 aa		28.19	■■■□□ 2.1
PNKP-205	ENST00000595081	FAM205A	Q6ZU69	1335 aa		28.18	■■■□□ 2.1
PNKP-205	ENST00000595081	GORAB	Q5T7V8	394 aa		28.18	■■■□□ 2.1
PNKP-205	ENST00000595081	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.18	■■■□□ 2.1
PNKP-205	ENST00000595081	DBNDD2	Q9BQY9	259 aa		28.18	■■■□□ 2.1
PNKP-205	ENST00000595081	DCTPP1	Q9H773	170 aa		28.18	■■■□□ 2.1
PNKP-205	ENST00000595081	TLR7	Q9NYK1	1049 aa	Known RBP	28.18	■■■□□ 2.1
PNKP-205	ENST00000595081	COL1A1	P02452	1464 aa	Predicted RBP	28.17	■■■□□ 2.1
PNKP-205	ENST00000595081	CCDC8	Q9H0W5	538 aa	Predicted RBP	28.17	■■■□□ 2.1
PNKP-205	ENST00000595081	GNL3L	Q9NVN8	582 aa	Known RBP	28.17	■■■□□ 2.1
PNKP-205	ENST00000595081	CENPB	P07199	599 aa	Predicted RBP	28.16	■■■□□ 2.1
PNKP-205	ENST00000595081	POTEI	P0CG38	1075 aa		28.16	■■■□□ 2.1
PNKP-205	ENST00000595081	POTEJ	P0CG39	1038 aa		28.16	■■■□□ 2.1
PNKP-205	ENST00000595081	EAPP	Q56P03	285 aa	Predicted RBP	28.16	■■■□□ 2.1
PNKP-205	ENST00000595081	AACS	Q86V21	672 aa		28.16	■■■□□ 2.1
PNKP-205	ENST00000595081	DBNL	Q9UJU6	430 aa	Known RBP	28.16	■■■□□ 2.1
PNKP-205	ENST00000595081	MYO3B	Q8WXR4	1341 aa		28.16	■■■□□ 2.1
PNKP-205	ENST00000595081		H7C1D1	291 aa		28.15	■■■□□ 2.1
PNKP-205	ENST00000595081	MFSD14B	Q5SR56	506 aa		28.15	■■■□□ 2.1
PNKP-205	ENST00000595081	KIAA0825	Q8IV33	1275 aa		28.15	■■■□□ 2.1
PNKP-205	ENST00000595081	ADARB2	Q9NS39	739 aa	Known RBP	28.15	■■■□□ 2.1
PNKP-205	ENST00000595081	USP17L8	P0C7I0	530 aa		28.14	■■■□□ 2.1
PNKP-205	ENST00000595081	SAMD7	Q7Z3H4	446 aa		28.14	■■■□□ 2.1
PNKP-205	ENST00000595081	TRPM4	Q8TD43	1214 aa		28.14	■■■□□ 2.1
PNKP-205	ENST00000595081	SMARCA5	O60264	1052 aa	Predicted RBP	28.13	■■■□□ 2.09
PNKP-205	ENST00000595081	FKBP1A	P62942	108 aa	Known RBP	28.13	■■■□□ 2.09
PNKP-205	ENST00000595081	HDAC1	Q13547	482 aa	Predicted RBP	28.13	■■■□□ 2.09
PNKP-205	ENST00000595081	RASGRF1	Q13972	1273 aa		28.13	■■■□□ 2.09
PNKP-205	ENST00000595081	CLASRP	Q8N2M8	674 aa	Known RBP	28.13	■■■□□ 2.09
PNKP-205	ENST00000595081	LRRCC1	Q9C099	1032 aa		28.13	■■■□□ 2.09
PNKP-205	ENST00000595081		F8W031	263 aa	Predicted RBP	28.12	■■■□□ 2.09
PNKP-205	ENST00000595081	EGFR	P00533	1210 aa		28.12	■■■□□ 2.09
PNKP-205	ENST00000595081	ZNF280A	P59817	542 aa	Predicted RBP	28.12	■■■□□ 2.09
PNKP-205	ENST00000595081	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	28.12	■■■□□ 2.09
PNKP-205	ENST00000595081	RBM26	Q5T8P6	1007 aa	Known RBP	28.12	■■■□□ 2.09
PNKP-205	ENST00000595081	SEMA3E	O15041	775 aa		28.11	■■■□□ 2.09
PNKP-205	ENST00000595081	TOMM70	O94826	608 aa		28.11	■■■□□ 2.09
PNKP-205	ENST00000595081	GRIK5	Q16478	980 aa		28.11	■■■□□ 2.09
PNKP-205	ENST00000595081	USP50	Q70EL3	339 aa	Predicted RBP	28.11	■■■□□ 2.09
PNKP-205	ENST00000595081	PNMA8A	Q86V59	439 aa	Predicted RBP	28.11	■■■□□ 2.09
PNKP-205	ENST00000595081	DENND2A	Q9ULE3	1009 aa		28.11	■■■□□ 2.09
PNKP-205	ENST00000595081	HIRA	P54198	1017 aa	Predicted RBP	28.1	■■■□□ 2.09
PNKP-205	ENST00000595081	SCARF1	Q14162	830 aa		28.1	■■■□□ 2.09
PNKP-205	ENST00000595081	TTC39A	Q5SRH9	613 aa		28.1	■■■□□ 2.09
PNKP-205	ENST00000595081	MYH13	Q9UKX3	1938 aa		28.1	■■■□□ 2.09
PNKP-205	ENST00000595081	ARID4A	P29374	1257 aa	Predicted RBP	28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	CCDC158	Q5M9N0	1113 aa		28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	PI16	Q6UXB8	463 aa		28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	OGFOD1	Q8N543	542 aa		28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	WDR66	Q8TBY9	1149 aa		28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	TBC1D22A	Q8WUA7	517 aa		28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	CLEC11A	Q9Y240	323 aa		28.09	■■■□□ 2.09
PNKP-205	ENST00000595081	IFIT2	P09913	472 aa	Known RBP	28.08	■■■□□ 2.09
PNKP-205	ENST00000595081	KIF4B	Q2VIQ3	1234 aa		28.08	■■■□□ 2.09
PNKP-205	ENST00000595081	LDHD	Q86WU2	507 aa		28.08	■■■□□ 2.09
PNKP-205	ENST00000595081	RBM46	Q8TBY0	533 aa	Known RBP	28.08	■■■□□ 2.09
PNKP-205	ENST00000595081	MYOZ2	Q9NPC6	264 aa		28.08	■■■□□ 2.09
PNKP-205	ENST00000595081	HMG20B	Q9P0W2	317 aa		28.08	■■■□□ 2.09
PNKP-205	ENST00000595081	ZBTB22	O15209	634 aa		28.07	■■■□□ 2.08
PNKP-205	ENST00000595081	IGHD	P01880	384 aa		28.07	■■■□□ 2.08
PNKP-205	ENST00000595081	UQCRFS1P1	P0C7P4	283 aa		28.07	■■■□□ 2.08
PNKP-205	ENST00000595081	MCAM	P43121	646 aa		28.07	■■■□□ 2.08
PNKP-205	ENST00000595081	RWDD1	Q9H446	243 aa	Predicted RBP	28.07	■■■□□ 2.08
PNKP-205	ENST00000595081	HDAC9	Q9UKV0	1011 aa		28.07	■■■□□ 2.08
PNKP-205	ENST00000595081	ADAMTSL1	Q8N6G6	1762 aa		28.06	■■■□□ 2.08
PNKP-205	ENST00000595081	SPATA5	Q8NB90	893 aa		28.06	■■■□□ 2.08
PNKP-205	ENST00000595081	TTF2	Q9UNY4	1162 aa	Known RBP	28.06	■■■□□ 2.08
PNKP-205	ENST00000595081	PDS5A	Q29RF7	1337 aa	Known RBP	28.05	■■■□□ 2.08
PNKP-205	ENST00000595081	SNRK	Q9NRH2	765 aa		28.05	■■■□□ 2.08
PNKP-205	ENST00000595081	CHADL	Q6NUI6	762 aa		28.04	■■■□□ 2.08
PNKP-205	ENST00000595081	SMC1B	Q8NDV3	1235 aa		28.04	■■■□□ 2.08
PNKP-205	ENST00000595081	GCC1	Q96CN9	775 aa		28.04	■■■□□ 2.08
PNKP-205	ENST00000595081	ASTN2	O75129	1339 aa	Predicted RBP	28.03	■■■□□ 2.08
PNKP-205	ENST00000595081	SALL1	Q9NSC2	1324 aa		28.03	■■■□□ 2.08
PNKP-205	ENST00000595081	ZNF512B	Q96KM6	892 aa	Predicted RBP	28.03	■■■□□ 2.08
PNKP-205	ENST00000595081	PCDHAC2	Q9Y5I4	1007 aa		28.03	■■■□□ 2.08
PNKP-205	ENST00000595081	PRDX5	P30044	214 aa		28.02	■■■□□ 2.08
PNKP-205	ENST00000595081	MAP1S	Q66K74	1059 aa	Predicted RBP	28.02	■■■□□ 2.08
PNKP-205	ENST00000595081	MMP14	P50281	582 aa		28.01	■■■□□ 2.07
PNKP-205	ENST00000595081	NBPF9	Q3BBW0	867 aa		28.01	■■■□□ 2.07
PNKP-205	ENST00000595081	ANKRD45	Q5TZF3	282 aa		28.01	■■■□□ 2.07
PNKP-205	ENST00000595081	ABCF2	Q9UG63	623 aa		28.01	■■■□□ 2.07
PNKP-205	ENST00000595081	SUGT1	Q9Y2Z0	365 aa		28.01	■■■□□ 2.07
PNKP-205	ENST00000595081	CFAP100	Q494V2	611 aa		28	■■■□□ 2.07
PNKP-205	ENST00000595081	TBC1D9	Q6ZT07	1266 aa		28	■■■□□ 2.07
PNKP-205	ENST00000595081	WNT10B	O00744	389 aa		27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	LDHB	P07195	334 aa	Known RBP	27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	ZAP70	P43403	619 aa		27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	RBM5	P52756	815 aa	Known RBP eCLIP	27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	DLGAP5	Q15398	846 aa		27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	SMC5	Q8IY18	1101 aa		27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	ZGPAT	Q8N5A5	531 aa	Known RBP	27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	ZC3H15	Q8WU90	426 aa	Known RBP	27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	ZBED3	Q96IU2	234 aa	Predicted RBP	27.99	■■■□□ 2.07
PNKP-205	ENST00000595081	PGAP2	Q9UHJ9	254 aa		27.99	■■■□□ 2.07

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms