RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 METTL24Q5JXM2 366 aa29.45■■■□□ 2.31
LSM4-204ENST00000594828 ZBED3Q96IU2 234 aaPredicted RBP29.45■■■□□ 2.31
LSM4-204ENST00000594828 FAM84BQ96KN1 310 aaPredicted RBP29.45■■■□□ 2.31
LSM4-204ENST00000594828 API5Q9BZZ5 524 aaKnown RBP29.45■■■□□ 2.31
LSM4-204ENST00000594828 JAG2Q9Y219 1238 aa29.45■■■□□ 2.31
LSM4-204ENST00000594828 FAM155AB1AL88 458 aaPredicted RBP29.44■■■□□ 2.3
LSM4-204ENST00000594828 F8W031 263 aaPredicted RBP29.44■■■□□ 2.3
LSM4-204ENST00000594828 RARSP54136 660 aaKnown RBP29.44■■■□□ 2.3
LSM4-204ENST00000594828 FKBP1BP68106 108 aa29.44■■■□□ 2.3
LSM4-204ENST00000594828 DLGAP5Q15398 846 aa29.44■■■□□ 2.3
LSM4-204ENST00000594828 PRAMEF18Q5VWM3 479 aa29.44■■■□□ 2.3
LSM4-204ENST00000594828 TDRD7Q8NHU6 1098 aaKnown RBP29.44■■■□□ 2.3
LSM4-204ENST00000594828 KLHDC4Q8TBB5 520 aa29.44■■■□□ 2.3
LSM4-204ENST00000594828 ZIC5Q96T25 663 aa29.44■■■□□ 2.3
LSM4-204ENST00000594828 DIEXFQ68CQ4 756 aaKnown RBP29.42■■■□□ 2.3
LSM4-204ENST00000594828 APOBEC3FQ8IUX4 373 aaKnown RBP29.42■■■□□ 2.3
LSM4-204ENST00000594828 MIER1Q8N108 512 aa29.42■■■□□ 2.3
LSM4-204ENST00000594828 FAM205AQ6ZU69 1335 aa29.42■■■□□ 2.3
LSM4-204ENST00000594828 CA12O43570 354 aa29.41■■■□□ 2.3
LSM4-204ENST00000594828 PDE8BO95263 885 aa29.41■■■□□ 2.3
LSM4-204ENST00000594828 UBTFL1P0CB47 393 aaPredicted RBP29.41■■■□□ 2.3
LSM4-204ENST00000594828 MTMR14Q8NCE2 650 aa29.41■■■□□ 2.3
LSM4-204ENST00000594828 CAPN15O75808 1086 aa29.4■■■□□ 2.3
LSM4-204ENST00000594828 VPS37DQ86XT2 251 aa29.4■■■□□ 2.3
LSM4-204ENST00000594828 NF2P35240 595 aa29.39■■■□□ 2.3
LSM4-204ENST00000594828 CFAP100Q494V2 611 aa29.39■■■□□ 2.3
LSM4-204ENST00000594828 VGLL2Q8N8G2 317 aa29.39■■■□□ 2.3
LSM4-204ENST00000594828 TSKSQ9UJT2 592 aa29.39■■■□□ 2.3
LSM4-204ENST00000594828 RFX5P48382 616 aaPredicted RBP29.38■■■□□ 2.29
LSM4-204ENST00000594828 KIF23Q02241 960 aaPredicted RBP29.38■■■□□ 2.29
LSM4-204ENST00000594828 CAVIN4Q5BKX8 364 aa29.38■■■□□ 2.29
LSM4-204ENST00000594828 MFSD14BQ5SR56 506 aa29.38■■■□□ 2.29
LSM4-204ENST00000594828 FBXO33Q7Z6M2 555 aa29.38■■■□□ 2.29
LSM4-204ENST00000594828 ARHGAP45Q92619 1136 aa29.38■■■□□ 2.29
LSM4-204ENST00000594828 SLC10A3P09131 477 aa29.37■■■□□ 2.29
LSM4-204ENST00000594828 TTLL12Q14166 644 aaPredicted RBP29.37■■■□□ 2.29
LSM4-204ENST00000594828 MOB2Q70IA6 237 aa29.37■■■□□ 2.29
LSM4-204ENST00000594828 HDAC5Q9UQL6 1122 aa29.37■■■□□ 2.29
LSM4-204ENST00000594828 PCDHAC2Q9Y5I4 1007 aa29.37■■■□□ 2.29
LSM4-204ENST00000594828 KIF16BQ96L93 1317 aa29.37■■■□□ 2.29
LSM4-204ENST00000594828 PAPPA2Q9BXP8 1791 aa29.36■■■□□ 2.29
LSM4-204ENST00000594828 UBE2Q2LH0YL09 131 aa29.36■■■□□ 2.29
LSM4-204ENST00000594828 EYA2O00167 538 aa29.36■■■□□ 2.29
LSM4-204ENST00000594828 MYO1BO43795 1136 aa29.36■■■□□ 2.29
LSM4-204ENST00000594828 RBM5P52756 815 aaKnown RBP eCLIP29.36■■■□□ 2.29
LSM4-204ENST00000594828 PTPN12Q05209 780 aaKnown RBP29.36■■■□□ 2.29
LSM4-204ENST00000594828 PRMT6Q96LA8 375 aaPredicted RBP29.36■■■□□ 2.29
LSM4-204ENST00000594828 SPDYE2BA6NHP3 402 aa29.35■■■□□ 2.29
LSM4-204ENST00000594828 SPDYE6P0CI01 402 aa29.35■■■□□ 2.29
LSM4-204ENST00000594828 FRAT2O75474 233 aaPredicted RBP29.34■■■□□ 2.29
LSM4-204ENST00000594828 DEFB129Q9H1M3 183 aa29.34■■■□□ 2.29
LSM4-204ENST00000594828 TTF2Q9UNY4 1162 aaKnown RBP29.34■■■□□ 2.29
LSM4-204ENST00000594828 IQSEC3Q9UPP2 1182 aaPredicted RBP29.34■■■□□ 2.29
LSM4-204ENST00000594828 IFIT1P09914 478 aaKnown RBP29.33■■■□□ 2.29
LSM4-204ENST00000594828 PUM3Q15397 648 aaKnown RBP29.33■■■□□ 2.29
LSM4-204ENST00000594828 RASAL3Q86YV0 1011 aa29.33■■■□□ 2.29
LSM4-204ENST00000594828 LRRFIP2Q9Y608 721 aaKnown RBP29.33■■■□□ 2.29
LSM4-204ENST00000594828 IPO8O15397 1037 aaKnown RBP29.32■■■□□ 2.28
LSM4-204ENST00000594828 BCAMP50895 628 aa29.32■■■□□ 2.28
LSM4-204ENST00000594828 INTS3Q68E01 1043 aaKnown RBP29.32■■■□□ 2.28
LSM4-204ENST00000594828 CLRN2A0PK11 232 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 FGFR2P21802 821 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 HNRNPUQ00839 825 aaKnown RBP eCLIP29.31■■■□□ 2.28
LSM4-204ENST00000594828 CHAF1AQ13111 956 aaPredicted RBP29.31■■■□□ 2.28
LSM4-204ENST00000594828 ARMC9Q7Z3E5 817 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 CSRNP1Q96S65 589 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 MEIS3Q99687 375 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 SERPINA10Q9UK55 444 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 FBXO3Q9UK99 471 aa29.31■■■□□ 2.28
LSM4-204ENST00000594828 COL1A1P02452 1464 aaPredicted RBP29.3■■■□□ 2.28
LSM4-204ENST00000594828 PRKG1Q13976 671 aa29.3■■■□□ 2.28
LSM4-204ENST00000594828 ATG9AQ7Z3C6 839 aa29.3■■■□□ 2.28
LSM4-204ENST00000594828 VEZTQ9HBM0 779 aa29.3■■■□□ 2.28
LSM4-204ENST00000594828 PPP2R3BQ9Y5P8 575 aa29.3■■■□□ 2.28
LSM4-204ENST00000594828 REM2Q8IYK8 340 aaPredicted RBP29.29■■■□□ 2.28
LSM4-204ENST00000594828 TBC1D22AQ8WUA7 517 aa29.29■■■□□ 2.28
LSM4-204ENST00000594828 SIL1Q9H173 461 aa29.29■■■□□ 2.28
LSM4-204ENST00000594828 BCAR3O75815 825 aa29.28■■■□□ 2.28
LSM4-204ENST00000594828 CIAO1O76071 339 aa29.28■■■□□ 2.28
LSM4-204ENST00000594828 SLC5A1P13866 664 aa29.28■■■□□ 2.28
LSM4-204ENST00000594828 LPIN2Q92539 896 aa29.28■■■□□ 2.28
LSM4-204ENST00000594828 FRAT1Q92837 279 aaPredicted RBP29.28■■■□□ 2.28
LSM4-204ENST00000594828 AOX1Q06278 1338 aa29.27■■■□□ 2.28
LSM4-204ENST00000594828 GNAI3P08754 354 aa29.27■■■□□ 2.28
LSM4-204ENST00000594828 RNF186Q9NXI6 227 aa29.27■■■□□ 2.28
LSM4-204ENST00000594828 SAGE1Q9NXZ1 904 aa29.27■■■□□ 2.28
LSM4-204ENST00000594828 TRIM27P14373 513 aa29.26■■■□□ 2.27
LSM4-204ENST00000594828 GRIK5Q16478 980 aa29.26■■■□□ 2.27
LSM4-204ENST00000594828 CEP126Q9P2H0 1117 aa29.26■■■□□ 2.27
LSM4-204ENST00000594828 ANGEL1Q9UNK9 670 aaKnown RBP29.26■■■□□ 2.27
LSM4-204ENST00000594828 ECM29Q5VYK3 1845 aa29.25■■■□□ 2.27
LSM4-204ENST00000594828 TRPA1O75762 1119 aa29.25■■■□□ 2.27
LSM4-204ENST00000594828 CRKP46108 304 aa29.25■■■□□ 2.27
LSM4-204ENST00000594828 SUPT20HL1Q3ZLR7 823 aa29.25■■■□□ 2.27
LSM4-204ENST00000594828 ATF7IPQ6VMQ6 1270 aa29.25■■■□□ 2.27
LSM4-204ENST00000594828 DZIP1LQ8IYY4 767 aaKnown RBP29.25■■■□□ 2.27
LSM4-204ENST00000594828 SPDYE2Q495Y8 402 aa29.24■■■□□ 2.27
LSM4-204ENST00000594828 LDLRAD1Q5T700 205 aa29.24■■■□□ 2.27
LSM4-204ENST00000594828 TDRD3Q9H7E2 651 aaKnown RBP29.24■■■□□ 2.27
LSM4-204ENST00000594828 COPRSQ9NQ92 184 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms