RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 FKBP1AP62942 108 aaKnown RBP18.04■□□□□ 0.48
VRK3-206ENST00000594090 TFCP2Q12800 502 aa18.04■□□□□ 0.48
VRK3-206ENST00000594090 G3BP1Q13283 466 aaKnown RBP eCLIP18.04■□□□□ 0.48
VRK3-206ENST00000594090 RBM26Q5T8P6 1007 aaKnown RBP18.04■□□□□ 0.48
VRK3-206ENST00000594090 CERS5Q8N5B7 392 aa18.04■□□□□ 0.48
VRK3-206ENST00000594090 MYOZ2Q9NPC6 264 aa18.04■□□□□ 0.48
VRK3-206ENST00000594090 PGAP2Q9UHJ9 254 aa18.04■□□□□ 0.48
VRK3-206ENST00000594090 IQSEC3Q9UPP2 1182 aaPredicted RBP18.04■□□□□ 0.48
VRK3-206ENST00000594090 PASKQ96RG2 1323 aa18.04■□□□□ 0.48
VRK3-206ENST00000594090 KIAA0825Q8IV33 1275 aa18.03■□□□□ 0.48
VRK3-206ENST00000594090 OGFOD1Q8N543 542 aa18.03■□□□□ 0.48
VRK3-206ENST00000594090 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.03■□□□□ 0.48
VRK3-206ENST00000594090 AKAP2Q9Y2D5 859 aa18.02■□□□□ 0.48
VRK3-206ENST00000594090 NOP58Q9Y2X3 529 aaKnown RBP18.02■□□□□ 0.48
VRK3-206ENST00000594090 COL1A1P02452 1464 aaPredicted RBP18.01■□□□□ 0.47
VRK3-206ENST00000594090 A0A1B0GUL7 405 aa18.01■□□□□ 0.47
VRK3-206ENST00000594090 FRAT2O75474 233 aaPredicted RBP18.01■□□□□ 0.47
VRK3-206ENST00000594090 SURF6O75683 361 aaKnown RBP18.01■□□□□ 0.47
VRK3-206ENST00000594090 MMP14P50281 582 aa18.01■□□□□ 0.47
VRK3-206ENST00000594090 MFSD14BQ5SR56 506 aa18.01■□□□□ 0.47
VRK3-206ENST00000594090 HDAC9Q9UKV0 1011 aa18.01■□□□□ 0.47
VRK3-206ENST00000594090 ADORA1P30542 326 aa18■□□□□ 0.47
VRK3-206ENST00000594090 TIMM10P62072 90 aa18■□□□□ 0.47
VRK3-206ENST00000594090 CHAF1AQ13111 956 aaPredicted RBP18■□□□□ 0.47
VRK3-206ENST00000594090 OS9Q13438 667 aaPredicted RBP18■□□□□ 0.47
VRK3-206ENST00000594090 RPAP2Q8IXW5 612 aaPredicted RBP18■□□□□ 0.47
VRK3-206ENST00000594090 PHKA1P46020 1223 aa17.99■□□□□ 0.47
VRK3-206ENST00000594090 GGA3Q9NZ52 723 aa17.99■□□□□ 0.47
VRK3-206ENST00000594090 ASTN2O75129 1339 aaPredicted RBP17.99■□□□□ 0.47
VRK3-206ENST00000594090 TRPM7Q96QT4 1865 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 F8W031 263 aaPredicted RBP17.98■□□□□ 0.47
VRK3-206ENST00000594090 HTRA3P83110 453 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 SCARF1Q14162 830 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 SIRT2Q8IXJ6 389 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 XAGE2Q96GT9 111 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 GLIS2Q9BZE0 524 aaPredicted RBP17.98■□□□□ 0.47
VRK3-206ENST00000594090 TRAF5O00463 557 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 HMMRO75330 724 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 FMR1Q06787 632 aaKnown RBP eCLIP17.98■□□□□ 0.47
VRK3-206ENST00000594090 CCDC102BQ68D86 513 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 CDC37L1Q7L3B6 337 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 TBC1D22AQ8WUA7 517 aa17.98■□□□□ 0.47
VRK3-206ENST00000594090 GNL3LQ9NVN8 582 aaKnown RBP17.98■□□□□ 0.47
VRK3-206ENST00000594090 ECM29Q5VYK3 1845 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 WNT10BO00744 389 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 ZBTB22O15209 634 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 NBPF9Q3BBW0 867 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 DCPSQ96C86 337 aaKnown RBP17.97■□□□□ 0.47
VRK3-206ENST00000594090 ZBED3Q96IU2 234 aaPredicted RBP17.97■□□□□ 0.47
VRK3-206ENST00000594090 NEUROD6Q96NK8 337 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 GPR108Q9NPR9 543 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 CREBZFQ9NS37 354 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 EXOC6BQ9Y2D4 811 aa17.97■□□□□ 0.47
VRK3-206ENST00000594090 PITPNM2Q9BZ72 1349 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 POLR2AP24928 1970 aaKnown RBP17.96■□□□□ 0.47
VRK3-206ENST00000594090 SEMA3EO15041 775 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 GRIK5Q16478 980 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 TNNI3KQ59H18 835 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 ANGEL2Q5VTE6 544 aaKnown RBP17.96■□□□□ 0.47
VRK3-206ENST00000594090 KRT26Q7Z3Y9 468 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 MTMR14Q8NCE2 650 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 DENND2AQ9ULE3 1009 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 TTF2Q9UNY4 1162 aaKnown RBP17.96■□□□□ 0.47
VRK3-206ENST00000594090 FPGT-TNNI3KV9GXZ4 949 aa17.96■□□□□ 0.47
VRK3-206ENST00000594090 CEP350Q5VT06 3117 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 TMEM88BA6NKF7 163 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 ADM5C9JUS6 153 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 DLGAP5Q15398 846 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 CFAP100Q494V2 611 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 USP48Q86UV5 1035 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 WDR66Q8TBY9 1149 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 PCDHAC2Q9Y5I4 1007 aa17.95■□□□□ 0.46
VRK3-206ENST00000594090 RASGRF1Q13972 1273 aa17.94■□□□□ 0.46
VRK3-206ENST00000594090 HSP90AB4PQ58FF6 505 aa17.94■□□□□ 0.46
VRK3-206ENST00000594090 ERC1Q8IUD2 1116 aa17.94■□□□□ 0.46
VRK3-206ENST00000594090 SULF1Q8IWU6 871 aa17.94■□□□□ 0.46
VRK3-206ENST00000594090 SUGT1Q9Y2Z0 365 aa17.94■□□□□ 0.46
VRK3-206ENST00000594090 PDS5AQ29RF7 1337 aaKnown RBP17.93■□□□□ 0.46
VRK3-206ENST00000594090 GORABQ5T7V8 394 aa17.93■□□□□ 0.46
VRK3-206ENST00000594090 SERPINA10Q9UK55 444 aa17.93■□□□□ 0.46
VRK3-206ENST00000594090 SALL1Q9NSC2 1324 aa17.93■□□□□ 0.46
VRK3-206ENST00000594090 SPDYE2BA6NHP3 402 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 SPDYE6P0CI01 402 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 CST9Q5W186 159 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 DLK2Q6UY11 383 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 DNAJC5GQ8N7S2 189 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 CRBNQ96SW2 442 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 DBNDD2Q9BQY9 259 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 MAST3O60307 1309 aa17.92■□□□□ 0.46
VRK3-206ENST00000594090 CELF2O95319 508 aaKnown RBP17.91■□□□□ 0.46
VRK3-206ENST00000594090 ARID4AP29374 1257 aaPredicted RBP17.91■□□□□ 0.46
VRK3-206ENST00000594090 CRKP46108 304 aa17.91■□□□□ 0.46
VRK3-206ENST00000594090 RBM5P52756 815 aaKnown RBP eCLIP17.91■□□□□ 0.46
VRK3-206ENST00000594090 PRDX5P30044 214 aa17.9■□□□□ 0.46
VRK3-206ENST00000594090 HDLBPQ00341 1268 aaKnown RBP17.9■□□□□ 0.46
VRK3-206ENST00000594090 APOBEC3FQ8IUX4 373 aaKnown RBP17.9■□□□□ 0.46
VRK3-206ENST00000594090 RHPN1Q8TCX5 695 aa17.9■□□□□ 0.46
VRK3-206ENST00000594090 EAF2Q96CJ1 260 aaPredicted RBP17.9■□□□□ 0.46
VRK3-206ENST00000594090 KIF1BPQ96EK5 621 aa17.9■□□□□ 0.46
VRK3-206ENST00000594090 PRMT6Q96LA8 375 aaPredicted RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms