RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 TNFRSF21O75509 655 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 SSFA2P28290 1259 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 USP5P45974 858 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 IRAK1P51617 712 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 EHHADHQ08426 723 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 IKBKEQ14164 716 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 HGSNATQ68CP4 663 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 SNX29Q8TEQ0 813 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 NXPE3Q969Y0 559 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 MTMR7Q9Y216 660 aa6.82□□□□□ -1.32
VPS4B-203ENST00000588323 COL17A1Q9UMD9 1497 aaPredicted RBP6.81□□□□□ -1.32
VPS4B-203ENST00000588323 MEGF11A6BM72 1044 aa6.81□□□□□ -1.32
VPS4B-203ENST00000588323 TMEM88BA6NKF7 163 aa6.81□□□□□ -1.32
VPS4B-203ENST00000588323 SOX1O00570 391 aaPredicted RBP6.81□□□□□ -1.32
VPS4B-203ENST00000588323 FAM13AO94988 1023 aa6.81□□□□□ -1.32
VPS4B-203ENST00000588323 GP2P55259 537 aaKnown RBP6.81□□□□□ -1.32
VPS4B-203ENST00000588323 NUTM2GQ5VZR2 741 aa6.81□□□□□ -1.32
VPS4B-203ENST00000588323 ASAP3Q8TDY4 903 aa6.81□□□□□ -1.32
VPS4B-203ENST00000588323 USP26Q9BXU7 913 aa6.81□□□□□ -1.32
VPS4B-203ENST00000588323 PRR19A6NJB7 356 aa6.8□□□□□ -1.32
VPS4B-203ENST00000588323 PAX4O43316 350 aa6.8□□□□□ -1.32
VPS4B-203ENST00000588323 PPP1R15AO75807 674 aaPredicted RBP6.8□□□□□ -1.32
VPS4B-203ENST00000588323 SPINK2P20155 84 aa6.8□□□□□ -1.32
VPS4B-203ENST00000588323 SHKBP1Q8TBC3 707 aa6.8□□□□□ -1.32
VPS4B-203ENST00000588323 KRTAP4-12Q9BQ66 201 aa6.8□□□□□ -1.32
VPS4B-203ENST00000588323 FOXD3Q9UJU5 478 aaPredicted RBP6.8□□□□□ -1.32
VPS4B-203ENST00000588323 OAS3Q9Y6K5 1087 aaKnown RBP6.8□□□□□ -1.32
VPS4B-203ENST00000588323 NPR3P17342 541 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 MAP4P27816 1152 aaKnown RBP6.79□□□□□ -1.32
VPS4B-203ENST00000588323 RXRBP28702 533 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 VN1R5Q7Z5H4 357 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 CCDC82Q8N4S0 544 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 C12orf50Q8NA57 414 aaPredicted RBP6.79□□□□□ -1.32
VPS4B-203ENST00000588323 GIMAP7Q8NHV1 300 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 CYP4F12Q9HCS2 524 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 AMOTL2Q9Y2J4 779 aa6.79□□□□□ -1.32
VPS4B-203ENST00000588323 WDR64B1ANS9 1081 aa6.78□□□□□ -1.32
VPS4B-203ENST00000588323 FKBP4Q02790 459 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS4B-203ENST00000588323 SF3B2Q13435 895 aaKnown RBP6.78□□□□□ -1.32
VPS4B-203ENST00000588323 SGO2Q562F6 1265 aa6.78□□□□□ -1.32
VPS4B-203ENST00000588323 DTX1Q86Y01 620 aa6.78□□□□□ -1.32
VPS4B-203ENST00000588323 KRTAP1-3Q8IUG1 177 aa6.78□□□□□ -1.32
VPS4B-203ENST00000588323 SMG8Q8ND04 991 aaKnown RBP6.78□□□□□ -1.32
VPS4B-203ENST00000588323 MFSD14AQ96MC6 490 aa6.78□□□□□ -1.32
VPS4B-203ENST00000588323 TMPRSS13Q9BYE2 586 aa6.78□□□□□ -1.32
VPS4B-203ENST00000588323 BHLHE41Q9C0J9 482 aaPredicted RBP6.78□□□□□ -1.32
VPS4B-203ENST00000588323 SOX17Q9H6I2 414 aaPredicted RBP6.78□□□□□ -1.32
VPS4B-203ENST00000588323 LOC100289279A0A1B0GTE1 492 aa6.77□□□□□ -1.33
VPS4B-203ENST00000588323 ABL1P00519 1130 aa6.77□□□□□ -1.33
VPS4B-203ENST00000588323 ESRRAP11474 423 aaPredicted RBP6.77□□□□□ -1.33
VPS4B-203ENST00000588323 LCE3BQ5TA77 95 aa6.77□□□□□ -1.33
VPS4B-203ENST00000588323 SUGCTQ9HAC7 445 aa6.77□□□□□ -1.33
VPS4B-203ENST00000588323 ATG3Q9NT62 314 aa6.77□□□□□ -1.33
VPS4B-203ENST00000588323 FZD6O60353 706 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 EIF4EBP3O60516 100 aaPredicted RBP6.76□□□□□ -1.33
VPS4B-203ENST00000588323 ADAMTS4O75173 837 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 WNT11O96014 354 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 USP11P51784 963 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 GSTM4Q03013 218 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 GOLGA2P5Q9HBQ8 144 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 LATS2Q9NRM7 1088 aa6.76□□□□□ -1.33
VPS4B-203ENST00000588323 TIAF1O95411 115 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 TAL1P17542 331 aaPredicted RBP6.75□□□□□ -1.33
VPS4B-203ENST00000588323 EXOSC6Q5RKV6 272 aaKnown RBP6.75□□□□□ -1.33
VPS4B-203ENST00000588323 PEAR1Q5VY43 1037 aaPredicted RBP6.75□□□□□ -1.33
VPS4B-203ENST00000588323 GJD3Q8N144 294 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 FBXL6Q8N531 539 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 ZFYVE28Q9HCC9 887 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 ANO2Q9NQ90 1003 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 CCDC87Q9NVE4 849 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 PIM2Q9P1W9 311 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 LEMD3Q9Y2U8 911 aa6.75□□□□□ -1.33
VPS4B-203ENST00000588323 FAM95CA0A1B0GW59 222 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 DLGAP3O95886 979 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 POLR3DP05423 398 aaPredicted RBP6.74□□□□□ -1.33
VPS4B-203ENST00000588323 DRD2P14416 443 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 TXKP42681 527 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 ZNF211Q13398 564 aaPredicted RBP6.74□□□□□ -1.33
VPS4B-203ENST00000588323 NFKBIBQ15653 356 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 PHLDB3Q6NSJ2 640 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 PAOXQ6QHF9 649 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 OSBPL1AQ9BXW6 950 aa6.74□□□□□ -1.33
VPS4B-203ENST00000588323 METTL12A8MUP2 240 aa6.73□□□□□ -1.33
VPS4B-203ENST00000588323 F13BP05160 661 aa6.73□□□□□ -1.33
VPS4B-203ENST00000588323 HOXA10P31260 410 aaPredicted RBP6.73□□□□□ -1.33
VPS4B-203ENST00000588323 YIPF2Q9BWQ6 316 aa6.73□□□□□ -1.33
VPS4B-203ENST00000588323 CARNS1A5YM72 827 aa6.72□□□□□ -1.33
VPS4B-203ENST00000588323 CPSF6Q16630 551 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS4B-203ENST00000588323 CDPF1Q6NVV7 123 aa6.72□□□□□ -1.33
VPS4B-203ENST00000588323 FBLIM1Q8WUP2 373 aa6.72□□□□□ -1.33
VPS4B-203ENST00000588323 CLEC4MQ9H2X3 399 aaPredicted RBP6.72□□□□□ -1.33
VPS4B-203ENST00000588323 ANGEL1Q9UNK9 670 aaKnown RBP6.72□□□□□ -1.33
VPS4B-203ENST00000588323 A0A096LPE4 126 aa6.71□□□□□ -1.34
VPS4B-203ENST00000588323 A0A1W2PPZ6 126 aa6.71□□□□□ -1.34
VPS4B-203ENST00000588323 FOSL1P15407 271 aa6.71□□□□□ -1.34
VPS4B-203ENST00000588323 SOX4Q06945 474 aaPredicted RBP6.71□□□□□ -1.34
VPS4B-203ENST00000588323 PCDH1Q08174 1060 aa6.71□□□□□ -1.34
VPS4B-203ENST00000588323 KRTAP19-1Q8IUB9 90 aa6.71□□□□□ -1.34
VPS4B-203ENST00000588323 GALNT12Q8IXK2 581 aa6.71□□□□□ -1.34
VPS4B-203ENST00000588323 C2CD4AQ8NCU7 369 aaPredicted RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms