RNA–Protein interactions for RNA: ENST00000584582.5

TOP3A-217, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 3,661 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-217ENST00000584582 RFX5P48382 616 aaPredicted RBP13.18□□□□□ -0.3
TOP3A-217ENST00000584582 NBPF5PQ86XG9 351 aaPredicted RBP13.18□□□□□ -0.3
TOP3A-217ENST00000584582 APPBP2Q92624 585 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 HELLSQ9NRZ9 838 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 WWC3Q9ULE0 1092 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 MAP3K15Q6ZN16 1313 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 UQCRHLA0A096LP55 91 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 UQCRHP07919 91 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 CDK11BP21127 795 aaKnown RBP13.18□□□□□ -0.3
TOP3A-217ENST00000584582 CCDC152Q4G0S7 254 aa13.18□□□□□ -0.3
TOP3A-217ENST00000584582 GNL3LQ9NVN8 582 aaKnown RBP13.18□□□□□ -0.3
TOP3A-217ENST00000584582 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.18□□□□□ -0.3
TOP3A-217ENST00000584582 PRKAB2O43741 272 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 PDE8AO60658 829 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 MFSD6Q6ZSS7 791 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 TTLL11Q8NHH1 800 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 SDR42E1Q8WUS8 393 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 TSC1Q92574 1164 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 USP28Q96RU2 1077 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 TRMT1Q9NXH9 659 aaKnown RBP13.17□□□□□ -0.3
TOP3A-217ENST00000584582 DENND2AQ9ULE3 1009 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 CAVIN4Q5BKX8 364 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 TRIM22Q8IYM9 498 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 MON2Q7Z3U7 1717 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 PIK3C2AO00443 1686 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 ZBTB43O43298 467 aa13.17□□□□□ -0.3
TOP3A-217ENST00000584582 PCCAP05165 728 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-217ENST00000584582 CRKLP46109 303 aaKnown RBP13.17□□□□□ -0.3
TOP3A-217ENST00000584582 FAM177A1Q8N128 213 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-217ENST00000584582 LOC102724428A0A0B4J2F2 783 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 MCAMP43121 646 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 SIK1P57059 783 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 CCDC186Q7Z3E2 898 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 ZNF652Q9Y2D9 606 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 GNPATO15228 680 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 ZFYP08048 801 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-217ENST00000584582 ATP2B2Q01814 1243 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 ZMYM1Q5SVZ6 1142 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 ANKRD18AQ8IVF6 992 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 C16orf45Q96MC5 204 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-217ENST00000584582 CCDC87Q9NVE4 849 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 NCOA3Q9Y6Q9 1424 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 TPM4P67936 248 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 TPD52L1Q16890 204 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-217ENST00000584582 SUSD4Q5VX71 490 aa13.16□□□□□ -0.3
TOP3A-217ENST00000584582 PTGS1P23219 599 aa13.15□□□□□ -0.3
TOP3A-217ENST00000584582 GLIPR1L2Q4G1C9 344 aa13.15□□□□□ -0.3
TOP3A-217ENST00000584582 ZKSCAN5Q9Y2L8 839 aa13.15□□□□□ -0.3
TOP3A-217ENST00000584582 NCAPD2Q15021 1401 aa13.15□□□□□ -0.3
TOP3A-217ENST00000584582 NRDCO43847 1150 aa13.15□□□□□ -0.3
TOP3A-217ENST00000584582 PDIA3P30101 505 aaKnown RBP13.15□□□□□ -0.3
TOP3A-217ENST00000584582 KLHL10Q6JEL2 608 aa13.15□□□□□ -0.3
TOP3A-217ENST00000584582 PIH1D3Q9NQM4 214 aaKnown RBP13.15□□□□□ -0.3
TOP3A-217ENST00000584582 PDE8BO95263 885 aa13.15□□□□□ -0.31
TOP3A-217ENST00000584582 PDE6AP16499 860 aa13.15□□□□□ -0.31
TOP3A-217ENST00000584582 TTF1Q15361 905 aaPredicted RBP13.15□□□□□ -0.31
TOP3A-217ENST00000584582 DDX19AQ9NUU7 478 aaKnown RBP13.15□□□□□ -0.31
TOP3A-217ENST00000584582 PUM3Q15397 648 aaKnown RBP13.14□□□□□ -0.31
TOP3A-217ENST00000584582 SPATA5Q8NB90 893 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 CDC5LQ99459 802 aaKnown RBP13.14□□□□□ -0.31
TOP3A-217ENST00000584582 CLIP2Q9UDT6 1046 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 ZNF609O15014 1411 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 KCNJ14Q9UNX9 436 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 KNDC1Q76NI1 1749 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 RPAP1Q9BWH6 1393 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-217ENST00000584582 RABL6Q3YEC7 729 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-217ENST00000584582 HOMER1Q86YM7 354 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 SETDB2Q96T68 719 aa13.14□□□□□ -0.31
TOP3A-217ENST00000584582 NOL10Q9BSC4 688 aaKnown RBP13.14□□□□□ -0.31
TOP3A-217ENST00000584582 ZSCAN16Q9H4T2 348 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-217ENST00000584582 F8W031 263 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-217ENST00000584582 UQCRFS1P1P0C7P4 283 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 PTPN21Q16825 1174 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 CEP57L1Q8IYX8 460 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 AOPEPQ8N6M6 819 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 FAM200AQ8TCP9 573 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 CYP2D7A0A087X1C5 515 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 SERPINC1P01008 464 aa13.13□□□□□ -0.31
TOP3A-217ENST00000584582 DZIP1Q86YF9 867 aaKnown RBP13.13□□□□□ -0.31
TOP3A-217ENST00000584582 NSUN7Q8NE18 718 aaKnown RBP13.13□□□□□ -0.31
TOP3A-217ENST00000584582 WTAPQ15007 396 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 CCAR2Q8N163 923 aaKnown RBP13.12□□□□□ -0.31
TOP3A-217ENST00000584582 DSCC1Q9BVC3 393 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 SRP68Q9UHB9 627 aaKnown RBP13.12□□□□□ -0.31
TOP3A-217ENST00000584582 MST1RQ04912 1400 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 LMOD1P29536 600 aaPredicted RBP13.12□□□□□ -0.31
TOP3A-217ENST00000584582 SSRP1Q08945 709 aaKnown RBP13.12□□□□□ -0.31
TOP3A-217ENST00000584582 LPIN2Q92539 896 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 TMX1Q9H3N1 280 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 SLC3A2P08195 630 aaKnown RBP13.12□□□□□ -0.31
TOP3A-217ENST00000584582 CYP19A1P11511 503 aaPredicted RBP13.12□□□□□ -0.31
TOP3A-217ENST00000584582 USP5P45974 858 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 CBX8Q9HC52 389 aa13.12□□□□□ -0.31
TOP3A-217ENST00000584582 SPTLC2O15270 562 aa13.11□□□□□ -0.31
TOP3A-217ENST00000584582 CDKL5O76039 1030 aa13.11□□□□□ -0.31
TOP3A-217ENST00000584582 RFC4P35249 363 aa13.11□□□□□ -0.31
TOP3A-217ENST00000584582 ST3GAL1Q11201 340 aa13.11□□□□□ -0.31
TOP3A-217ENST00000584582 NAT10Q9H0A0 1025 aaKnown RBP13.11□□□□□ -0.31
TOP3A-217ENST00000584582 VAT1LQ9HCJ6 419 aa13.11□□□□□ -0.31
TOP3A-217ENST00000584582 WTIPA6NIX2 430 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms