RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 MPHOSPH8Q99549 860 aa16.38■□□□□ 0.21
SS18-219ENST00000581570 MKI67P46013 3256 aaKnown RBP16.38■□□□□ 0.21
SS18-219ENST00000581570 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
SS18-219ENST00000581570 CLRN2A0PK11 232 aa16.37■□□□□ 0.21
SS18-219ENST00000581570 MYO1BO43795 1136 aa16.37■□□□□ 0.21
SS18-219ENST00000581570 USP2O75604 605 aaPredicted RBP16.37■□□□□ 0.21
SS18-219ENST00000581570 GJA5P36382 358 aa16.37■□□□□ 0.21
SS18-219ENST00000581570 CALD1Q05682 793 aaKnown RBP16.37■□□□□ 0.21
SS18-219ENST00000581570 NBPF12Q5TAG4 269 aaPredicted RBP16.37■□□□□ 0.21
SS18-219ENST00000581570 CERS5Q8N5B7 392 aa16.37■□□□□ 0.21
SS18-219ENST00000581570 PCDHAC2Q9Y5I4 1007 aa16.37■□□□□ 0.21
SS18-219ENST00000581570 SSC5DA1L4H1 1573 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 TESPA1A2RU30 521 aaPredicted RBP16.36■□□□□ 0.21
SS18-219ENST00000581570 F8W031 263 aaPredicted RBP16.36■□□□□ 0.21
SS18-219ENST00000581570 H7C1W4 665 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 ITGA6P23229 1130 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 CWF19L2Q2TBE0 894 aaKnown RBP16.36■□□□□ 0.21
SS18-219ENST00000581570 CFAP100Q494V2 611 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 UBE3BQ7Z3V4 1068 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 ANKRD13AQ8IZ07 590 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 PTPN18Q99952 460 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 VEZTQ9HBM0 779 aa16.36■□□□□ 0.21
SS18-219ENST00000581570 COLQQ9Y215 455 aaPredicted RBP16.36■□□□□ 0.21
SS18-219ENST00000581570 NEURL1BA8MQ27 555 aa16.35■□□□□ 0.21
SS18-219ENST00000581570 CAP1Q01518 475 aa16.35■□□□□ 0.21
SS18-219ENST00000581570 CHRNDQ07001 517 aa16.35■□□□□ 0.21
SS18-219ENST00000581570 ARHGEF6Q15052 776 aa16.35■□□□□ 0.21
SS18-219ENST00000581570 NBPF11Q86T75 865 aa16.35■□□□□ 0.21
SS18-219ENST00000581570 PRMT6Q96LA8 375 aaPredicted RBP16.35■□□□□ 0.21
SS18-219ENST00000581570 HTTP42858 3142 aa16.35■□□□□ 0.21
SS18-219ENST00000581570 ZNF646O15015 1829 aaPredicted RBP16.34■□□□□ 0.21
SS18-219ENST00000581570 SPDYE2BA6NHP3 402 aa16.34■□□□□ 0.21
SS18-219ENST00000581570 SPDYE6P0CI01 402 aa16.34■□□□□ 0.21
SS18-219ENST00000581570 ZNF333Q96JL9 665 aa16.34■□□□□ 0.21
SS18-219ENST00000581570 PLA2G12BQ9BX93 195 aa16.34■□□□□ 0.21
SS18-219ENST00000581570 SNAP23O00161 211 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 APAF1O14727 1248 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 RASA3Q14644 834 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 SLC4A8Q2Y0W8 1093 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 SLC9C1Q4G0N8 1177 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 OPTNQ96CV9 577 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 ELP3Q9H9T3 547 aa16.33■□□□□ 0.2
SS18-219ENST00000581570 CSF1RP07333 972 aa16.32■□□□□ 0.2
SS18-219ENST00000581570 RBM5P52756 815 aaKnown RBP eCLIP16.32■□□□□ 0.2
SS18-219ENST00000581570 C15orf52Q6ZUT6 534 aaKnown RBP16.32■□□□□ 0.2
SS18-219ENST00000581570 TSPYL6Q8N831 410 aa16.32■□□□□ 0.2
SS18-219ENST00000581570 MS4A4AQ96JQ5 239 aa16.32■□□□□ 0.2
SS18-219ENST00000581570 STK31Q9BXU1 1019 aa16.32■□□□□ 0.2
SS18-219ENST00000581570 ZFYVE28Q9HCC9 887 aa16.32■□□□□ 0.2
SS18-219ENST00000581570 PTCH2Q9Y6C5 1203 aa16.32■□□□□ 0.2
SS18-219ENST00000581570 AOX1Q06278 1338 aa16.31■□□□□ 0.2
SS18-219ENST00000581570 IRS2Q9Y4H2 1338 aa16.31■□□□□ 0.2
SS18-219ENST00000581570 TAF5LO75529 589 aa16.31■□□□□ 0.2
SS18-219ENST00000581570 IL1R1P14778 569 aa16.31■□□□□ 0.2
SS18-219ENST00000581570 FKBP1AP62942 108 aaKnown RBP16.31■□□□□ 0.2
SS18-219ENST00000581570 GCKRQ14397 625 aa16.31■□□□□ 0.2
SS18-219ENST00000581570 HELBQ8NG08 1087 aaPredicted RBP16.31■□□□□ 0.2
SS18-219ENST00000581570 ANKRD18BA2A2Z9 1011 aa16.3■□□□□ 0.2
SS18-219ENST00000581570 CASP7P55210 303 aa16.3■□□□□ 0.2
SS18-219ENST00000581570 TAF1CQ15572 869 aaPredicted RBP16.3■□□□□ 0.2
SS18-219ENST00000581570 ZNF804AQ7Z570 1209 aa16.3■□□□□ 0.2
SS18-219ENST00000581570 BRI3BPQ8WY22 251 aa16.3■□□□□ 0.2
SS18-219ENST00000581570 JAG2Q9Y219 1238 aa16.3■□□□□ 0.2
SS18-219ENST00000581570 RBBP6Q7Z6E9 1792 aaKnown RBP16.3■□□□□ 0.2
SS18-219ENST00000581570 SPEF2Q9C093 1822 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 CCL15-CCL14A0A0B4J2E2 113 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 H0YGN5 161 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 MYCP01106 439 aaPredicted RBP16.29■□□□□ 0.2
SS18-219ENST00000581570 TNFAIP1Q13829 316 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 CCL15Q16663 113 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 G2E3Q7L622 706 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 CENPFP49454 3210 aa16.29■□□□□ 0.2
SS18-219ENST00000581570 KIAA0100Q14667 2235 aaKnown RBP16.29■□□□□ 0.2
SS18-219ENST00000581570 GTF2A2P52657 109 aa16.28■□□□□ 0.2
SS18-219ENST00000581570 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.28■□□□□ 0.2
SS18-219ENST00000581570 OTUD5Q96G74 571 aa16.28■□□□□ 0.2
SS18-219ENST00000581570 MYH16Q9H6N6 1097 aa16.28■□□□□ 0.2
SS18-219ENST00000581570 ZNF70Q9UC06 446 aaPredicted RBP16.28■□□□□ 0.2
SS18-219ENST00000581570 SLC4A2P04920 1241 aa16.27■□□□□ 0.2
SS18-219ENST00000581570 MAP3K9P80192 1104 aa16.27■□□□□ 0.2
SS18-219ENST00000581570 DDX10Q13206 875 aaKnown RBP16.27■□□□□ 0.2
SS18-219ENST00000581570 SPDYE2Q495Y8 402 aa16.27■□□□□ 0.2
SS18-219ENST00000581570 FAM43AQ8N2R8 423 aa16.27■□□□□ 0.2
SS18-219ENST00000581570 TDRD3Q9H7E2 651 aaKnown RBP16.27■□□□□ 0.2
SS18-219ENST00000581570 WDHD1O75717 1129 aaPredicted RBP16.26■□□□□ 0.19
SS18-219ENST00000581570 IFIT5Q13325 482 aaKnown RBP16.26■□□□□ 0.19
SS18-219ENST00000581570 KIF22Q14807 665 aa16.26■□□□□ 0.19
SS18-219ENST00000581570 SH3TC2Q8TF17 1288 aa16.26■□□□□ 0.19
SS18-219ENST00000581570 CSADQ9Y600 493 aa16.26■□□□□ 0.19
SS18-219ENST00000581570 MYH3P11055 1940 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 BRCA2P51587 3418 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 PLIN1O60240 522 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 VGLL4Q14135 290 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 CHRDL2Q6WN34 429 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 TSR2Q969E8 191 aaKnown RBP16.25■□□□□ 0.19
SS18-219ENST00000581570 TEPSINQ96N21 525 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 SERPINA10Q9UK55 444 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 TTF2Q9UNY4 1162 aaKnown RBP16.25■□□□□ 0.19
SS18-219ENST00000581570 CHMP3Q9Y3E7 222 aa16.25■□□□□ 0.19
SS18-219ENST00000581570 FAM205AQ6ZU69 1335 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms