RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 MYH16Q9H6N6 1097 aa12.7□□□□□ -0.38
RFFL-208ENST00000581039 PTPN22Q9Y2R2 807 aa12.7□□□□□ -0.38
RFFL-208ENST00000581039 COL1A1P02452 1464 aaPredicted RBP12.7□□□□□ -0.38
RFFL-208ENST00000581039 CLRN2A0PK11 232 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 TAF5LO75529 589 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 RBM5P52756 815 aaKnown RBP eCLIP12.69□□□□□ -0.38
RFFL-208ENST00000581039 CFAP100Q494V2 611 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 G2E3Q7L622 706 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 CERS5Q8N5B7 392 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 PRMT6Q96LA8 375 aaPredicted RBP12.69□□□□□ -0.38
RFFL-208ENST00000581039 EFCC1Q9HA90 598 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 VEZTQ9HBM0 779 aa12.69□□□□□ -0.38
RFFL-208ENST00000581039 SPDYE2BA6NHP3 402 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 SPDYE6P0CI01 402 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 SP3Q02447 781 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 CRHR2Q13324 411 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 TWISTNBQ3B726 338 aaPredicted RBP12.68□□□□□ -0.38
RFFL-208ENST00000581039 NBPF12Q5TAG4 269 aaPredicted RBP12.68□□□□□ -0.38
RFFL-208ENST00000581039 C15orf52Q6ZUT6 534 aaKnown RBP12.68□□□□□ -0.38
RFFL-208ENST00000581039 ZNF804AQ7Z570 1209 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 ANKRD13AQ8IZ07 590 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 HELBQ8NG08 1087 aaPredicted RBP12.68□□□□□ -0.38
RFFL-208ENST00000581039 CD99L2Q8TCZ2 262 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 TSR2Q969E8 191 aaKnown RBP12.68□□□□□ -0.38
RFFL-208ENST00000581039 PCDHAC2Q9Y5I4 1007 aa12.68□□□□□ -0.38
RFFL-208ENST00000581039 SNAP23O00161 211 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 USP2O75604 605 aaPredicted RBP12.67□□□□□ -0.38
RFFL-208ENST00000581039 IL1R1P14778 569 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 CASP7P55210 303 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 FKBP1AP62942 108 aaKnown RBP12.67□□□□□ -0.38
RFFL-208ENST00000581039 IFIT5Q13325 482 aaKnown RBP12.67□□□□□ -0.38
RFFL-208ENST00000581039 RASA3Q14644 834 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 ARHGEF6Q15052 776 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 ARMC5Q96C12 935 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 TMEM106CQ9BVX2 250 aa12.67□□□□□ -0.38
RFFL-208ENST00000581039 PRKRIP1Q9H875 184 aaPredicted RBP12.67□□□□□ -0.38
RFFL-208ENST00000581039 EN2P19622 333 aaPredicted RBP12.66□□□□□ -0.38
RFFL-208ENST00000581039 FLIIQ13045 1269 aa12.66□□□□□ -0.38
RFFL-208ENST00000581039 FKBP5Q13451 457 aaPredicted RBP12.66□□□□□ -0.38
RFFL-208ENST00000581039 LINS1Q8NG48 757 aa12.66□□□□□ -0.38
RFFL-208ENST00000581039 DNAAF4Q8WXU2 420 aa12.66□□□□□ -0.38
RFFL-208ENST00000581039 PTPN18Q99952 460 aa12.66□□□□□ -0.38
RFFL-208ENST00000581039 JAG2Q9Y219 1238 aa12.66□□□□□ -0.38
RFFL-208ENST00000581039 CHMP3Q9Y3E7 222 aa12.66□□□□□ -0.38
RFFL-208ENST00000581039 TESPA1A2RU30 521 aaPredicted RBP12.65□□□□□ -0.38
RFFL-208ENST00000581039 GJA5P36382 358 aa12.65□□□□□ -0.38
RFFL-208ENST00000581039 TNFAIP1Q13829 316 aa12.65□□□□□ -0.38
RFFL-208ENST00000581039 NBPF11Q86T75 865 aa12.65□□□□□ -0.38
RFFL-208ENST00000581039 ELP3Q9H9T3 547 aa12.65□□□□□ -0.38
RFFL-208ENST00000581039 SPEF2Q9C093 1822 aa12.65□□□□□ -0.39
RFFL-208ENST00000581039 SSC5DA1L4H1 1573 aa12.64□□□□□ -0.39
RFFL-208ENST00000581039 IRS2Q9Y4H2 1338 aa12.64□□□□□ -0.39
RFFL-208ENST00000581039 MYH3P11055 1940 aa12.64□□□□□ -0.39
RFFL-208ENST00000581039 PLIN1O60240 522 aa12.64□□□□□ -0.39
RFFL-208ENST00000581039 OPTNQ96CV9 577 aa12.64□□□□□ -0.39
RFFL-208ENST00000581039 ZNF70Q9UC06 446 aaPredicted RBP12.64□□□□□ -0.39
RFFL-208ENST00000581039 ZNF646O15015 1829 aaPredicted RBP12.64□□□□□ -0.39
RFFL-208ENST00000581039 KIAA0100Q14667 2235 aaKnown RBP12.64□□□□□ -0.39
RFFL-208ENST00000581039 AOX1Q06278 1338 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 FOXO4P98177 505 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 CCDC57Q2TAC2 916 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 TAF7LQ5H9L4 462 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 LDHAL6AQ6ZMR3 332 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 MS4A4AQ96JQ5 239 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 ZFYVE28Q9HCC9 887 aa12.63□□□□□ -0.39
RFFL-208ENST00000581039 TTF2Q9UNY4 1162 aaKnown RBP12.63□□□□□ -0.39
RFFL-208ENST00000581039 WDHD1O75717 1129 aaPredicted RBP12.62□□□□□ -0.39
RFFL-208ENST00000581039 GTF2A2P52657 109 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 MAP3K9P80192 1104 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 TAF1CQ15572 869 aaPredicted RBP12.62□□□□□ -0.39
RFFL-208ENST00000581039 CCDC27Q2M243 656 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 SLC4A8Q2Y0W8 1093 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 SPDYE2Q495Y8 402 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 SLC9C1Q4G0N8 1177 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 MFSD14BQ5SR56 506 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 LMBR1LQ6UX01 489 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 WWC1Q8IX03 1113 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 ZNF333Q96JL9 665 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 TDRD3Q9H7E2 651 aaKnown RBP12.62□□□□□ -0.39
RFFL-208ENST00000581039 CNNM1Q9NRU3 951 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 SERPINA10Q9UK55 444 aa12.62□□□□□ -0.39
RFFL-208ENST00000581039 CCL15-CCL14A0A0B4J2E2 113 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 TCP10L2B9ZVM9 353 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 TNNI2P48788 182 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 CAP1Q01518 475 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 CCL15Q16663 113 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.61□□□□□ -0.39
RFFL-208ENST00000581039 DZIP1LQ8IYY4 767 aaKnown RBP12.61□□□□□ -0.39
RFFL-208ENST00000581039 BRI3BPQ8WY22 251 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 ZNF594Q96JF6 807 aaPredicted RBP12.61□□□□□ -0.39
RFFL-208ENST00000581039 CSADQ9Y600 493 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 FAM205AQ6ZU69 1335 aa12.61□□□□□ -0.39
RFFL-208ENST00000581039 HIBADHP31937 336 aaKnown RBP12.6□□□□□ -0.39
RFFL-208ENST00000581039 FXR1P51114 621 aaKnown RBP eCLIP12.6□□□□□ -0.39
RFFL-208ENST00000581039 VGLL4Q14135 290 aa12.6□□□□□ -0.39
RFFL-208ENST00000581039 KIF22Q14807 665 aa12.6□□□□□ -0.39
RFFL-208ENST00000581039 TDRD7Q8NHU6 1098 aaKnown RBP12.6□□□□□ -0.39
RFFL-208ENST00000581039 CNKSR2Q8WXI2 1034 aa12.6□□□□□ -0.39
RFFL-208ENST00000581039 TEPSINQ96N21 525 aa12.6□□□□□ -0.39
RFFL-208ENST00000581039 PTCH2Q9Y6C5 1203 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms