RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DACT2Q5SW24 774 aa19.01■□□□□ 0.63
SS18-216ENST00000580751 RSBN1LQ6PCB5 846 aaPredicted RBP19.01■□□□□ 0.63
SS18-216ENST00000580751 ZNF526Q8TF50 670 aaPredicted RBP19.01■□□□□ 0.63
SS18-216ENST00000580751 CCDC8Q9H0W5 538 aaPredicted RBP19.01■□□□□ 0.63
SS18-216ENST00000580751 MYH13Q9UKX3 1938 aa19■□□□□ 0.63
SS18-216ENST00000580751 UQCRFS1P1P0C7P4 283 aa19■□□□□ 0.63
SS18-216ENST00000580751 GPBP1L1Q9HC44 474 aaPredicted RBP19■□□□□ 0.63
SS18-216ENST00000580751 TLR7Q9NYK1 1049 aaKnown RBP19■□□□□ 0.63
SS18-216ENST00000580751 IQSEC3Q9UPP2 1182 aaPredicted RBP19■□□□□ 0.63
SS18-216ENST00000580751 ZNF646O15015 1829 aaPredicted RBP19■□□□□ 0.63
SS18-216ENST00000580751 PDS5AQ29RF7 1337 aaKnown RBP19■□□□□ 0.63
SS18-216ENST00000580751 IQCA1LA6NCM1 817 aa18.99■□□□□ 0.63
SS18-216ENST00000580751 LMOD1P29536 600 aaPredicted RBP18.99■□□□□ 0.63
SS18-216ENST00000580751 GMPSP49915 693 aaPredicted RBP18.99■□□□□ 0.63
SS18-216ENST00000580751 FKBP1AP62942 108 aaKnown RBP18.99■□□□□ 0.63
SS18-216ENST00000580751 TTC39AQ5SRH9 613 aa18.99■□□□□ 0.63
SS18-216ENST00000580751 AGBL3Q8NEM8 1001 aa18.99■□□□□ 0.63
SS18-216ENST00000580751 TBC1D22AQ8WUA7 517 aa18.99■□□□□ 0.63
SS18-216ENST00000580751 DPF2Q92785 391 aa18.99■□□□□ 0.63
SS18-216ENST00000580751 DENND2AQ9ULE3 1009 aa18.99■□□□□ 0.63
SS18-216ENST00000580751 SCN4AP35499 1836 aa18.98■□□□□ 0.63
SS18-216ENST00000580751 SMARCA5O60264 1052 aaPredicted RBP18.98■□□□□ 0.63
SS18-216ENST00000580751 ARID4AP29374 1257 aaPredicted RBP18.98■□□□□ 0.63
SS18-216ENST00000580751 CHAF1AQ13111 956 aaPredicted RBP18.98■□□□□ 0.63
SS18-216ENST00000580751 ZNF512BQ96KM6 892 aaPredicted RBP18.98■□□□□ 0.63
SS18-216ENST00000580751 BCL11AQ9H165 835 aa18.98■□□□□ 0.63
SS18-216ENST00000580751 COL1A1P02452 1464 aaPredicted RBP18.97■□□□□ 0.63
SS18-216ENST00000580751 SCNN1DP51172 638 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 NUCB1Q02818 461 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 RASGRF1Q13972 1273 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 MFSD14BQ5SR56 506 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 ANKRD45Q5TZF3 282 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 ZNF784Q8NCA9 323 aaPredicted RBP18.97■□□□□ 0.63
SS18-216ENST00000580751 WDR66Q8TBY9 1149 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 GPRC5DQ9NZD1 345 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 JAG2Q9Y219 1238 aa18.97■□□□□ 0.63
SS18-216ENST00000580751 ZBTB12Q9Y330 459 aaPredicted RBP18.97■□□□□ 0.63
SS18-216ENST00000580751 VEGFAP15692 232 aaPredicted RBP18.96■□□□□ 0.63
SS18-216ENST00000580751 MMP14P50281 582 aa18.96■□□□□ 0.63
SS18-216ENST00000580751 HACL1Q9UJ83 578 aa18.96■□□□□ 0.63
SS18-216ENST00000580751 SPATA5Q8NB90 893 aa18.95■□□□□ 0.62
SS18-216ENST00000580751 GPATCH3Q96I76 525 aa18.95■□□□□ 0.62
SS18-216ENST00000580751 GMLQ99445 158 aa18.95■□□□□ 0.62
SS18-216ENST00000580751 MXD3Q9BW11 206 aa18.95■□□□□ 0.62
SS18-216ENST00000580751 NMRK2Q9NPI5 230 aa18.95■□□□□ 0.62
SS18-216ENST00000580751 SALL1Q9NSC2 1324 aa18.95■□□□□ 0.62
SS18-216ENST00000580751 H7C1D1 291 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 USP17L8P0C7I0 530 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 MICALL2Q8IY33 904 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 OGFOD1Q8N543 542 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 ZGPATQ8N5A5 531 aaKnown RBP18.94■□□□□ 0.62
SS18-216ENST00000580751 CERS5Q8N5B7 392 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 RRAGCQ9HB90 399 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 HMG20BQ9P0W2 317 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 CNOT7Q9UIV1 285 aaKnown RBP18.94■□□□□ 0.62
SS18-216ENST00000580751 SUGT1Q9Y2Z0 365 aa18.94■□□□□ 0.62
SS18-216ENST00000580751 MCAMP43121 646 aa18.93■□□□□ 0.62
SS18-216ENST00000580751 CHD1LQ86WJ1 897 aa18.93■□□□□ 0.62
SS18-216ENST00000580751 KIAA0825Q8IV33 1275 aa18.93■□□□□ 0.62
SS18-216ENST00000580751 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.93■□□□□ 0.62
SS18-216ENST00000580751 HDAC9Q9UKV0 1011 aa18.93■□□□□ 0.62
SS18-216ENST00000580751 POTECB2RU33 542 aa18.92■□□□□ 0.62
SS18-216ENST00000580751 EPHX2P34913 555 aa18.92■□□□□ 0.62
SS18-216ENST00000580751 EPS15P42566 896 aa18.92■□□□□ 0.62
SS18-216ENST00000580751 ZNF280AP59817 542 aaPredicted RBP18.92■□□□□ 0.62
SS18-216ENST00000580751 SCARF1Q14162 830 aa18.92■□□□□ 0.62
SS18-216ENST00000580751 TAF1DQ9H5J8 278 aaPredicted RBP18.92■□□□□ 0.62
SS18-216ENST00000580751 ADARB2Q9NS39 739 aaKnown RBP18.92■□□□□ 0.62
SS18-216ENST00000580751 ECHDC1Q9NTX5 307 aa18.92■□□□□ 0.62
SS18-216ENST00000580751 MAST3O60307 1309 aa18.92■□□□□ 0.62
SS18-216ENST00000580751 PI16Q6UXB8 463 aa18.91■□□□□ 0.62
SS18-216ENST00000580751 PNMA8AQ86V59 439 aaPredicted RBP18.91■□□□□ 0.62
SS18-216ENST00000580751 AKAP11Q9UKA4 1901 aa18.9■□□□□ 0.62
SS18-216ENST00000580751 ATP5JP18859 108 aa18.9■□□□□ 0.62
SS18-216ENST00000580751 SPTY2D1Q68D10 685 aaPredicted RBP18.9■□□□□ 0.62
SS18-216ENST00000580751 LNPKQ9C0E8 428 aa18.9■□□□□ 0.62
SS18-216ENST00000580751 TTF2Q9UNY4 1162 aaKnown RBP18.9■□□□□ 0.62
SS18-216ENST00000580751 TTC41PQ6P2S7 1318 aa18.9■□□□□ 0.62
SS18-216ENST00000580751 F8W031 263 aaPredicted RBP18.89■□□□□ 0.61
SS18-216ENST00000580751 LDHBP07195 334 aaKnown RBP18.89■□□□□ 0.61
SS18-216ENST00000580751 MX1P20591 662 aa18.89■□□□□ 0.61
SS18-216ENST00000580751 USP50Q70EL3 339 aaPredicted RBP18.89■□□□□ 0.61
SS18-216ENST00000580751 C16orf71Q8IYS4 520 aaPredicted RBP18.89■□□□□ 0.61
SS18-216ENST00000580751 SNRKQ9NRH2 765 aa18.89■□□□□ 0.61
SS18-216ENST00000580751 ABCF2Q9UG63 623 aa18.89■□□□□ 0.61
SS18-216ENST00000580751 SHTN1A0MZ66 631 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 KIF3CO14782 793 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 ERC2O15083 957 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 IGSF3O75054 1194 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 ZAP70P43403 619 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 KIF4BQ2VIQ3 1234 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 MYOZ2Q9NPC6 264 aa18.88■□□□□ 0.61
SS18-216ENST00000580751 PRDX5P30044 214 aa18.87■□□□□ 0.61
SS18-216ENST00000580751 HDLBPQ00341 1268 aaKnown RBP18.87■□□□□ 0.61
SS18-216ENST00000580751 TTF1Q15361 905 aaPredicted RBP18.87■□□□□ 0.61
SS18-216ENST00000580751 TBC1D10BQ4KMP7 808 aaPredicted RBP18.87■□□□□ 0.61
SS18-216ENST00000580751 ERICH6Q7L0X2 663 aa18.87■□□□□ 0.61
SS18-216ENST00000580751 SAMD7Q7Z3H4 446 aa18.87■□□□□ 0.61
SS18-216ENST00000580751 OTUD7AQ8TE49 926 aaPredicted RBP18.87■□□□□ 0.61
SS18-216ENST00000580751 SALL3Q9BXA9 1300 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms