RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 VPS37DQ86XT2 251 aa23.96■■□□□ 1.43
SS18-208ENST00000577751 MYOZ2Q9NPC6 264 aa23.96■■□□□ 1.43
SS18-208ENST00000577751 ARAP2Q8WZ64 1704 aa23.96■■□□□ 1.43
SS18-208ENST00000577751 TFCP2Q12800 502 aa23.95■■□□□ 1.42
SS18-208ENST00000577751 G3BP1Q13283 466 aaKnown RBP eCLIP23.95■■□□□ 1.42
SS18-208ENST00000577751 RBM26Q5T8P6 1007 aaKnown RBP23.95■■□□□ 1.42
SS18-208ENST00000577751 NOP58Q9Y2X3 529 aaKnown RBP23.95■■□□□ 1.42
SS18-208ENST00000577751 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.95■■□□□ 1.42
SS18-208ENST00000577751 KIAA0825Q8IV33 1275 aa23.94■■□□□ 1.42
SS18-208ENST00000577751 OGFOD1Q8N543 542 aa23.94■■□□□ 1.42
SS18-208ENST00000577751 AKAP2Q9Y2D5 859 aa23.94■■□□□ 1.42
SS18-208ENST00000577751 POLR2AP24928 1970 aaKnown RBP23.93■■□□□ 1.42
SS18-208ENST00000577751 RPAP2Q8IXW5 612 aaPredicted RBP23.93■■□□□ 1.42
SS18-208ENST00000577751 JAG2Q9Y219 1238 aa23.93■■□□□ 1.42
SS18-208ENST00000577751 ZBTB22O15209 634 aa23.92■■□□□ 1.42
SS18-208ENST00000577751 RRP1P56182 461 aaKnown RBP23.92■■□□□ 1.42
SS18-208ENST00000577751 TIMM10P62072 90 aa23.92■■□□□ 1.42
SS18-208ENST00000577751 IQSEC3Q9UPP2 1182 aaPredicted RBP23.92■■□□□ 1.42
SS18-208ENST00000577751 MYH13Q9UKX3 1938 aa23.91■■□□□ 1.42
SS18-208ENST00000577751 A0A1B0GUL7 405 aa23.91■■□□□ 1.42
SS18-208ENST00000577751 SURF6O75683 361 aaKnown RBP23.91■■□□□ 1.42
SS18-208ENST00000577751 MFSD14BQ5SR56 506 aa23.91■■□□□ 1.42
SS18-208ENST00000577751 CDC37L1Q7L3B6 337 aa23.91■■□□□ 1.42
SS18-208ENST00000577751 HDAC9Q9UKV0 1011 aa23.91■■□□□ 1.42
SS18-208ENST00000577751 SCARF1Q14162 830 aa23.9■■□□□ 1.42
SS18-208ENST00000577751 TRPM7Q96QT4 1865 aa23.9■■□□□ 1.42
SS18-208ENST00000577751 ASTN2O75129 1339 aaPredicted RBP23.89■■□□□ 1.42
SS18-208ENST00000577751 FRAT2O75474 233 aaPredicted RBP23.89■■□□□ 1.41
SS18-208ENST00000577751 ADORA1P30542 326 aa23.89■■□□□ 1.41
SS18-208ENST00000577751 HTRA3P83110 453 aa23.89■■□□□ 1.41
SS18-208ENST00000577751 SIRT2Q8IXJ6 389 aa23.89■■□□□ 1.41
SS18-208ENST00000577751 ZBED3Q96IU2 234 aaPredicted RBP23.89■■□□□ 1.41
SS18-208ENST00000577751 GLIS2Q9BZE0 524 aaPredicted RBP23.89■■□□□ 1.41
SS18-208ENST00000577751 TRAF5O00463 557 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 WNT10BO00744 389 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 PHKA1P46020 1223 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 FMR1Q06787 632 aaKnown RBP eCLIP23.88■■□□□ 1.41
SS18-208ENST00000577751 NBPF9Q3BBW0 867 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 CCDC102BQ68D86 513 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 DNAJC5GQ8N7S2 189 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 MTMR14Q8NCE2 650 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 TBC1D22AQ8WUA7 517 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 XAGE2Q96GT9 111 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 GPR108Q9NPR9 543 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 CREBZFQ9NS37 354 aa23.88■■□□□ 1.41
SS18-208ENST00000577751 CHAF1AQ13111 956 aaPredicted RBP23.87■■□□□ 1.41
SS18-208ENST00000577751 DCPSQ96C86 337 aaKnown RBP23.87■■□□□ 1.41
SS18-208ENST00000577751 GNL3LQ9NVN8 582 aaKnown RBP23.87■■□□□ 1.41
SS18-208ENST00000577751 GGA3Q9NZ52 723 aa23.87■■□□□ 1.41
SS18-208ENST00000577751 COL1A1P02452 1464 aaPredicted RBP23.87■■□□□ 1.41
SS18-208ENST00000577751 PITPNM2Q9BZ72 1349 aa23.86■■□□□ 1.41
SS18-208ENST00000577751 TMEM88BA6NKF7 163 aa23.86■■□□□ 1.41
SS18-208ENST00000577751 F8W031 263 aaPredicted RBP23.86■■□□□ 1.41
SS18-208ENST00000577751 SEMA3EO15041 775 aa23.86■■□□□ 1.41
SS18-208ENST00000577751 OS9Q13438 667 aaPredicted RBP23.86■■□□□ 1.41
SS18-208ENST00000577751 USP48Q86UV5 1035 aa23.86■■□□□ 1.41
SS18-208ENST00000577751 GRIK5Q16478 980 aa23.85■■□□□ 1.41
SS18-208ENST00000577751 ANGEL2Q5VTE6 544 aaKnown RBP23.85■■□□□ 1.41
SS18-208ENST00000577751 KRT26Q7Z3Y9 468 aa23.85■■□□□ 1.41
SS18-208ENST00000577751 NEUROD6Q96NK8 337 aa23.85■■□□□ 1.41
SS18-208ENST00000577751 TTF2Q9UNY4 1162 aaKnown RBP23.85■■□□□ 1.41
SS18-208ENST00000577751 ECM29Q5VYK3 1845 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 CEP350Q5VT06 3117 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 HMMRO75330 724 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 TNNI3KQ59H18 835 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 CST9Q5W186 159 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 WDR66Q8TBY9 1149 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 DENND2AQ9ULE3 1009 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 SUGT1Q9Y2Z0 365 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 FPGT-TNNI3KV9GXZ4 949 aa23.84■■□□□ 1.41
SS18-208ENST00000577751 DLGAP5Q15398 846 aa23.83■■□□□ 1.41
SS18-208ENST00000577751 CFAP100Q494V2 611 aa23.83■■□□□ 1.41
SS18-208ENST00000577751 SERPINA10Q9UK55 444 aa23.83■■□□□ 1.41
SS18-208ENST00000577751 EXOC6BQ9Y2D4 811 aa23.83■■□□□ 1.41
SS18-208ENST00000577751 ADM5C9JUS6 153 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 HSP90AB4PQ58FF6 505 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 DLK2Q6UY11 383 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 SULF1Q8IWU6 871 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 PRMT6Q96LA8 375 aaPredicted RBP23.82■■□□□ 1.4
SS18-208ENST00000577751 MRIQ9BWK5 157 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 PCDHAC2Q9Y5I4 1007 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 PDS5AQ29RF7 1337 aaKnown RBP23.82■■□□□ 1.4
SS18-208ENST00000577751 SALL1Q9NSC2 1324 aa23.82■■□□□ 1.4
SS18-208ENST00000577751 SPDYE2BA6NHP3 402 aa23.81■■□□□ 1.4
SS18-208ENST00000577751 SPDYE6P0CI01 402 aa23.81■■□□□ 1.4
SS18-208ENST00000577751 HDLBPQ00341 1268 aaKnown RBP23.81■■□□□ 1.4
SS18-208ENST00000577751 ERC1Q8IUD2 1116 aa23.81■■□□□ 1.4
SS18-208ENST00000577751 RASGRF1Q13972 1273 aa23.8■■□□□ 1.4
SS18-208ENST00000577751 CELF2O95319 508 aaKnown RBP23.79■■□□□ 1.4
SS18-208ENST00000577751 ARID4AP29374 1257 aaPredicted RBP23.79■■□□□ 1.4
SS18-208ENST00000577751 CRKP46108 304 aa23.79■■□□□ 1.4
SS18-208ENST00000577751 GORABQ5T7V8 394 aa23.79■■□□□ 1.4
SS18-208ENST00000577751 EAF2Q96CJ1 260 aaPredicted RBP23.79■■□□□ 1.4
SS18-208ENST00000577751 KLRG1Q96E93 195 aa23.79■■□□□ 1.4
SS18-208ENST00000577751 DBNDD2Q9BQY9 259 aa23.79■■□□□ 1.4
SS18-208ENST00000577751 RHPN1Q8TCX5 695 aa23.78■■□□□ 1.4
SS18-208ENST00000577751 MAST3O60307 1309 aa23.78■■□□□ 1.4
SS18-208ENST00000577751 RBM5P52756 815 aaKnown RBP eCLIP23.77■■□□□ 1.4
SS18-208ENST00000577751 HMG20BQ9P0W2 317 aa23.77■■□□□ 1.4
SS18-208ENST00000577751 AOX1Q06278 1338 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms