RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RHPN1Q8TCX5 695 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 RAPGEF4Q8WZA2 1011 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 VPS18Q9P253 973 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 A0A1B0GUL7 405 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 SERPINC1P01008 464 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 BICC1Q9H694 974 aaKnown RBP11.11□□□□□ -0.63
CCDC40-212ENST00000574799 COL15A1P39059 1388 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 COL4A1P02462 1669 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 DDX60Q8IY21 1712 aaKnown RBP11.11□□□□□ -0.63
CCDC40-212ENST00000574799 SRGAP3O43295 1099 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 PPFIA3O75145 1194 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 HYPKQ9NX55 129 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 RRP15Q9Y3B9 282 aaKnown RBP11.11□□□□□ -0.63
CCDC40-212ENST00000574799 LOC102724159A0A0B4J2E5 919 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 SGSM2O43147 1006 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 PWP2Q15269 919 aaKnown RBP11.11□□□□□ -0.63
CCDC40-212ENST00000574799 IFNKQ9P0W0 207 aa11.11□□□□□ -0.63
CCDC40-212ENST00000574799 MYH3P11055 1940 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 COL5A3P25940 1745 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 TULP2O00295 520 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 ALDH1L1O75891 902 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 GNG11P61952 73 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 ME3Q16798 604 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 XAGE3Q8WTP9 111 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 KIF1BPQ96EK5 621 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 CARD10Q9BWT7 1032 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 AOX1Q06278 1338 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 DHX16O60231 1041 aaKnown RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 PHACTR2O75167 634 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 C11orf57Q6ZUT1 292 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 COPS6Q7L5N1 327 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 CCDC150Q8NCX0 1101 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 KLHDC4Q8TBB5 520 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 MRFAP1L1Q96HT8 127 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 TLR7Q9NYK1 1049 aaKnown RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 MYH14Q7Z406 1995 aaKnown RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 MYO5AQ9Y4I1 1855 aaKnown RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 CTAGE5O15320 804 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 MYL6BP14649 208 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 CFAP100Q494V2 611 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 ISM2Q6H9L7 571 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 CLASRPQ8N2M8 674 aaKnown RBP11.1□□□□□ -0.63
CCDC40-212ENST00000574799 FSIP1Q8NA03 581 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 LINS1Q8NG48 757 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 ZNF446Q9NWS9 450 aa11.1□□□□□ -0.63
CCDC40-212ENST00000574799 GCKRQ14397 625 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 VPS53Q5VIR6 699 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 ICE2Q659A1 982 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 TTLL5Q6EMB2 1281 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 SLC4A9Q96Q91 983 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 SIL1Q9H173 461 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 EPC1Q9H2F5 836 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 ANKRD65E5RJM6 399 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 GRM8O00222 908 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 EIF3JO75822 258 aaKnown RBP11.09□□□□□ -0.63
CCDC40-212ENST00000574799 IVLP07476 585 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 PLA2G4AP47712 749 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 ANKRD1Q15327 319 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 RGS22Q8NE09 1264 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 A0A1B0GUL6 1792 aa11.09□□□□□ -0.63
CCDC40-212ENST00000574799 ADCK5Q3MIX3 580 aa11.08□□□□□ -0.63
CCDC40-212ENST00000574799 PPP1R13BQ96KQ4 1090 aa11.08□□□□□ -0.63
CCDC40-212ENST00000574799 FHOD1Q9Y613 1164 aa11.08□□□□□ -0.63
CCDC40-212ENST00000574799 NWD2Q9ULI1 1742 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 GUCY1B3Q02153 619 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 AIMP1Q12904 312 aaKnown RBP11.08□□□□□ -0.64
CCDC40-212ENST00000574799 E2F4Q16254 413 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 SECISBP2LQ93073 1101 aaKnown RBP11.08□□□□□ -0.64
CCDC40-212ENST00000574799 MYCBPQ99417 103 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-212ENST00000574799 METTL22Q9BUU2 404 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-212ENST00000574799 ELP1O95163 1332 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 PCDH11XQ9BZA7 1347 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 PCDH11YQ9BZA8 1340 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 LMOD1P29536 600 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-212ENST00000574799 GOLGA5Q8TBA6 731 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 BRF1Q92994 677 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 HDAC5Q9UQL6 1122 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 JRKLQ9Y4A0 524 aa11.08□□□□□ -0.64
CCDC40-212ENST00000574799 ETF1P62495 437 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 RABL6Q3YEC7 729 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 JAKMIP3Q5VZ66 844 aa11.07□□□□□ -0.64
CCDC40-212ENST00000574799 NYAP1Q6ZVC0 841 aa11.07□□□□□ -0.64
CCDC40-212ENST00000574799 SRRTQ9BXP5 876 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 LRRN4CLQ8ND94 238 aa11.07□□□□□ -0.64
CCDC40-212ENST00000574799 FSD1Q9BTV5 496 aa11.07□□□□□ -0.64
CCDC40-212ENST00000574799 UTP14AQ9BVJ6 771 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 ZSCAN12O43309 604 aa11.07□□□□□ -0.64
CCDC40-212ENST00000574799 GLRX3O76003 335 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 SNRPA1P09661 255 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 SETQ01105 290 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 ZCRB1Q8TBF4 217 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 ORC3Q9UBD5 711 aaPredicted RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 RBM8AQ9Y5S9 174 aaKnown RBP11.07□□□□□ -0.64
CCDC40-212ENST00000574799 AKAP11Q9UKA4 1901 aa11.07□□□□□ -0.64
CCDC40-212ENST00000574799 CDC25BP30305 580 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 MNAT1P51948 309 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 FOXO4P98177 505 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 TTLL7Q6ZT98 887 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 TEX2Q8IWB9 1127 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 EAF2Q96CJ1 260 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms