RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 UBR1Q8IWV7 1749 aa8.41□□□□□ -1.06
VPS53-212ENST00000572259 KDM5AP29375 1690 aaKnown RBP8.41□□□□□ -1.06
VPS53-212ENST00000572259 XYLBO75191 536 aa8.41□□□□□ -1.06
VPS53-212ENST00000572259 PLCB3Q01970 1234 aa8.41□□□□□ -1.06
VPS53-212ENST00000572259 UBAP2LQ14157 1087 aaKnown RBP8.41□□□□□ -1.06
VPS53-212ENST00000572259 GJD3Q8N144 294 aa8.41□□□□□ -1.06
VPS53-212ENST00000572259 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS53-212ENST00000572259 CFHR5Q9BXR6 569 aa8.41□□□□□ -1.06
VPS53-212ENST00000572259 GGNBP2Q9H3C7 697 aa8.41□□□□□ -1.06
VPS53-212ENST00000572259 GPR25O00155 361 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 EFSO43281 561 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 NEFLP07196 543 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 ZNF16P17020 682 aaPredicted RBP8.4□□□□□ -1.06
VPS53-212ENST00000572259 VEGFBP49765 207 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 KCNQ4P56696 695 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 ZC3H6P61129 1189 aaKnown RBP8.4□□□□□ -1.06
VPS53-212ENST00000572259 ZNF438Q7Z4V0 828 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 NANOS1Q8WY41 292 aaKnown RBP8.4□□□□□ -1.06
VPS53-212ENST00000572259 PNMA5Q96PV4 448 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 NIF3L1Q9GZT8 377 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 C11orf16Q9NQ32 467 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 NDFIP2Q9NV92 336 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 KCNMB2Q9Y691 235 aa8.4□□□□□ -1.06
VPS53-212ENST00000572259 E9PCH4 1651 aa8.4□□□□□ -1.07
VPS53-212ENST00000572259 PIK3C2BO00750 1634 aa8.4□□□□□ -1.07
VPS53-212ENST00000572259 NPHP4O75161 1426 aaPredicted RBP8.39□□□□□ -1.07
VPS53-212ENST00000572259 SETD5Q9C0A6 1442 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 TMEM2Q9UHN6 1383 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 A6NHS1 94 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 FGFR3P22607 806 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 CCINQ13939 588 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 SF3A1Q15459 793 aaKnown RBP8.39□□□□□ -1.07
VPS53-212ENST00000572259 CERS3Q8IU89 383 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 NPAS3Q8IXF0 933 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 FBXO41Q8TF61 875 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 FAM129BQ96TA1 746 aa8.39□□□□□ -1.07
VPS53-212ENST00000572259 MED14O60244 1454 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 SCAF11Q99590 1463 aaKnown RBP8.38□□□□□ -1.07
VPS53-212ENST00000572259 CD33P20138 364 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 ZNF326Q5BKZ1 582 aaKnown RBP8.38□□□□□ -1.07
VPS53-212ENST00000572259 PDE12Q6L8Q7 609 aaKnown RBP8.38□□□□□ -1.07
VPS53-212ENST00000572259 SLC16A10Q8TF71 515 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 PSMD1Q99460 953 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 STRN4Q9NRL3 753 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 SYNMO15061 1565 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 SLIT1O75093 1534 aa8.38□□□□□ -1.07
VPS53-212ENST00000572259 ANKRD62A6NC57 917 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 EGFRP00533 1210 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 GRNP28799 593 aaKnown RBP8.37□□□□□ -1.07
VPS53-212ENST00000572259 LTKP29376 864 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 SPEM2Q0P670 501 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 NEUROD1Q13562 356 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 TRIP4Q15650 581 aaPredicted RBP8.37□□□□□ -1.07
VPS53-212ENST00000572259 TTC39BQ5VTQ0 682 aaPredicted RBP8.37□□□□□ -1.07
VPS53-212ENST00000572259 KRT25Q7Z3Z0 450 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 MPHOSPH9Q99550 1183 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 ELP3Q9H9T3 547 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 PRR12Q9ULL5 1215 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 ARHGAP23Q9P227 1491 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 SPHKAPQ2M3C7 1700 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 IQGAP1P46940 1657 aa8.37□□□□□ -1.07
VPS53-212ENST00000572259 KIF1BO60333 1816 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 ZNF335Q9H4Z2 1342 aaPredicted RBP8.36□□□□□ -1.07
VPS53-212ENST00000572259 ADGRB3O60242 1522 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 GPR182O15218 404 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 TREHO43280 583 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 SASH3O75995 380 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 MAPK8P45983 427 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 EAPPQ56P03 285 aaPredicted RBP8.36□□□□□ -1.07
VPS53-212ENST00000572259 XKR5Q6UX68 686 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 NLRP13Q86W25 1043 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 NPAS4Q8IUM7 802 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 ALKBH8Q96BT7 664 aaKnown RBP8.36□□□□□ -1.07
VPS53-212ENST00000572259 BCL2L13Q9BXK5 485 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 GSX2Q9BZM3 304 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 MYO5BQ9ULV0 1848 aa8.36□□□□□ -1.07
VPS53-212ENST00000572259 H3BM21 787 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 BMP4P12644 408 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 VAMP1P23763 118 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 TARSP26639 723 aaKnown RBP8.35□□□□□ -1.07
VPS53-212ENST00000572259 CTBSQ01459 385 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 COL19A1Q14993 1142 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 BHMTQ93088 406 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 EFCC1Q9HA90 598 aa8.35□□□□□ -1.07
VPS53-212ENST00000572259 NSFL1CQ9UNZ2 370 aaKnown RBP8.35□□□□□ -1.07
VPS53-212ENST00000572259 IQSEC2Q5JU85 1478 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 TMEM131LA2VDJ0 1609 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 TERTO14746 1132 aaKnown RBP8.34□□□□□ -1.07
VPS53-212ENST00000572259 RARAP10276 462 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 MX2P20592 715 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 DSC3Q14574 896 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 FAM182BQ5T319 152 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 SLC30A3Q99726 388 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 HIRIP3Q9BW71 556 aaPredicted RBP8.34□□□□□ -1.07
VPS53-212ENST00000572259 TMEM63CQ9P1W3 806 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 BCCIPQ9P287 314 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS53-212ENST00000572259 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.34□□□□□ -1.07
VPS53-212ENST00000572259 RIMS2Q9UQ26 1411 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 NEURL4Q96JN8 1562 aa8.34□□□□□ -1.07
VPS53-212ENST00000572259 CPS1P31327 1500 aa8.34□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms