RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 ATG9AQ7Z3C6 839 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 VPS37DQ86XT2 251 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 LPIN2Q92539 896 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 GPR108Q9NPR9 543 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 PIM2Q9P1W9 311 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 GGA1Q9UJY5 639 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 ATP6V0A2Q9Y487 856 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 RIPOR2Q9Y4F9 1068 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 ANKRD31Q8N7Z5 1873 aa8.06□□□□□ -1.12
CTDNEP1-204ENST00000570484 A0A0G2JLW4 131 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 A0A1B0GUL7 405 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 ERC2O15083 957 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 TAF5LO75529 589 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 SASH1O94885 1247 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 GRIPAP1Q4V328 841 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 CCDC93Q567U6 631 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 CAVIN4Q5BKX8 364 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 DALRD3Q5D0E6 543 aaKnown RBP8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 TTC39AQ5SRH9 613 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 CC2D2BQ6DHV5 1058 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 DPP8Q6V1X1 898 aaPredicted RBP8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 HELBQ8NG08 1087 aaPredicted RBP8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 FHDC1Q9C0D6 1143 aaPredicted RBP8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 MINPP1Q9UNW1 487 aa8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 NSFL1CQ9UNZ2 370 aaKnown RBP8.05□□□□□ -1.12
CTDNEP1-204ENST00000570484 C6orf229H3BNL8 230 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 ATP2B4P23634 1241 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 MAP3K9P80192 1104 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 UBE4AQ14139 1066 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 CCDC158Q5M9N0 1113 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 ZNF804AQ7Z570 1209 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 SP8Q8IXZ3 490 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 MPNDQ8N594 471 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 VGLL2Q8N8G2 317 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 SUPT20HQ8NEM7 779 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 EYA3Q99504 573 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 CCDC8Q9H0W5 538 aaPredicted RBP8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 ZSWIM6Q9HCJ5 1215 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 GNL3LQ9NVN8 582 aaKnown RBP8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 WWC3Q9ULE0 1092 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 BCS1LQ9Y276 419 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 LEMD3Q9Y2U8 911 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 COL4A1P02462 1669 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 DLEC1Q9Y238 1755 aa8.04□□□□□ -1.12
CTDNEP1-204ENST00000570484 ZNF804BA4D1E1 1349 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 AOX1Q06278 1338 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 TTC41PQ6P2S7 1318 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 LRRC37AA6NMS7 1700 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 SPEF2Q9C093 1822 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 MED23Q9ULK4 1368 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 C21orf2O43822 256 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 TBC1D12O60347 775 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 FRAT2O75474 233 aaPredicted RBP8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 GPSM2P81274 684 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 RTKN2Q8IZC4 609 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 NLGN2Q8NFZ4 835 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 EAF2Q96CJ1 260 aaPredicted RBP8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 XAGE2Q96GT9 111 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 DBNDD2Q9BQY9 259 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 ECHDC1Q9NTX5 307 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 TLR7Q9NYK1 1049 aaKnown RBP8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 DBNLQ9UJU6 430 aaKnown RBP8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 KIF13BQ9NQT8 1826 aa8.03□□□□□ -1.12
CTDNEP1-204ENST00000570484 GLRX3O76003 335 aaKnown RBP8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 UQCRFS1P1P0C7P4 283 aa8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 PDE1AP54750 535 aa8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 TSHZ3Q63HK5 1081 aa8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 GPR153Q6NV75 609 aa8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 DNAJC2Q99543 621 aaKnown RBP8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 PODXL2Q9NZ53 605 aa8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 PCDHGA4Q9Y5G9 962 aa8.02□□□□□ -1.13
CTDNEP1-204ENST00000570484 TRIM6-TRIM34B2RNG4 842 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 FGFR2P21802 821 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 ADORA1P30542 326 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 TIMM10P62072 90 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 DOK7Q18PE1 504 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 CASC1Q6TDU7 716 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 SKAP1Q86WV1 359 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 PLEKHM2Q8IWE5 1019 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 C16orf71Q8IYS4 520 aaPredicted RBP8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 CNTROBQ8N137 903 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 TBC1D16Q8TBP0 767 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 OTUD7AQ8TE49 926 aaPredicted RBP8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 ZC3H12CQ9C0D7 883 aaKnown RBP8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 TAOK3Q9H2K8 898 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 DUOX1Q9NRD9 1551 aa8.01□□□□□ -1.13
CTDNEP1-204ENST00000570484 ARAP2Q8WZ64 1704 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 KIAA1551Q9HCM1 1747 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 RIMBP2O15034 1052 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 PPIP5K2O43314 1243 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 EVI5O60447 810 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 KCNA3P22001 575 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 HIBADHP31937 336 aaKnown RBP8□□□□□ -1.13
CTDNEP1-204ENST00000570484 GYG1P46976 350 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 FKBP4Q02790 459 aaKnown RBP eCLIP8□□□□□ -1.13
CTDNEP1-204ENST00000570484 WASHC4Q2M389 1173 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 LRRFIP1Q32MZ4 808 aaKnown RBP8□□□□□ -1.13
CTDNEP1-204ENST00000570484 TTC22Q5TAA0 569 aa8□□□□□ -1.13
CTDNEP1-204ENST00000570484 CCDC102BQ68D86 513 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms