RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RNF39Q9H2S5 420 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 HMG20BQ9P0W2 317 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 MAST2Q6P0Q8 1798 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 PDS5AQ29RF7 1337 aaKnown RBP11.42□□□□□ -0.58
VPS35-211ENST00000569950 ZC3H4Q9UPT8 1303 aaKnown RBP11.42□□□□□ -0.58
VPS35-211ENST00000569950 PSMD14O00487 310 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 RAD17O75943 681 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 TSHZ3Q63HK5 1081 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 CENPQQ7L2Z9 268 aaPredicted RBP11.42□□□□□ -0.58
VPS35-211ENST00000569950 ZNF804AQ7Z570 1209 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 PLEKHM2Q8IWE5 1019 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 NIM1KQ8IY84 436 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 CLASRPQ8N2M8 674 aaKnown RBP11.42□□□□□ -0.58
VPS35-211ENST00000569950 ZNF384Q8TF68 577 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 STAP2Q9UGK3 403 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 JAG2Q9Y219 1238 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 NDUFB9Q9Y6M9 179 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 SCN4AP35499 1836 aa11.42□□□□□ -0.58
VPS35-211ENST00000569950 AK9Q5TCS8 1911 aa11.41□□□□□ -0.58
VPS35-211ENST00000569950 CDK5RAP2Q96SN8 1893 aa11.41□□□□□ -0.58
VPS35-211ENST00000569950 SHTN1A0MZ66 631 aa11.41□□□□□ -0.58
VPS35-211ENST00000569950 POTECB2RU33 542 aa11.41□□□□□ -0.58
VPS35-211ENST00000569950 NPM3O75607 178 aaKnown RBP11.41□□□□□ -0.58
VPS35-211ENST00000569950 VIL1P09327 827 aaKnown RBP11.41□□□□□ -0.58
VPS35-211ENST00000569950 CCDC136Q96JN2 1154 aa11.41□□□□□ -0.58
VPS35-211ENST00000569950 MYH2Q9UKX2 1941 aa11.41□□□□□ -0.58
VPS35-211ENST00000569950 SALL1Q9NSC2 1324 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 ECM29Q5VYK3 1845 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 SEMA3EO15041 775 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 ATP5JP18859 108 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 SCNN1DP51172 638 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 PDE1AP54750 535 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 GTF2IP78347 998 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 CAVIN4Q5BKX8 364 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 STRIP1Q5VSL9 837 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.4□□□□□ -0.58
VPS35-211ENST00000569950 JDP2Q8WYK2 163 aa11.4□□□□□ -0.58
VPS35-211ENST00000569950 EDC3Q96F86 508 aaKnown RBP11.4□□□□□ -0.58
VPS35-211ENST00000569950 AOX1Q06278 1338 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 USP17L3A6NCW0 530 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 USP17L4A6NCW7 530 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 DDNO94850 711 aaPredicted RBP11.39□□□□□ -0.59
VPS35-211ENST00000569950 CYP2E1P05181 493 aaPredicted RBP11.39□□□□□ -0.59
VPS35-211ENST00000569950 MX1P20591 662 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 ZAP70P43403 619 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 CIAPIN1Q6FI81 312 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 USP17L1Q7RTZ2 530 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 SPATA5Q8NB90 893 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 L3MBTL3Q96JM7 780 aaPredicted RBP11.39□□□□□ -0.59
VPS35-211ENST00000569950 OSBPL3Q9H4L5 887 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 ANTXR1Q9H6X2 564 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 PIH1D3Q9NQM4 214 aaKnown RBP11.39□□□□□ -0.59
VPS35-211ENST00000569950 SNRKQ9NRH2 765 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 ECHDC1Q9NTX5 307 aa11.39□□□□□ -0.59
VPS35-211ENST00000569950 ZBTB12Q9Y330 459 aaPredicted RBP11.39□□□□□ -0.59
VPS35-211ENST00000569950 POLR2AP24928 1970 aaKnown RBP11.39□□□□□ -0.59
VPS35-211ENST00000569950 TTC41PQ6P2S7 1318 aa11.38□□□□□ -0.59
VPS35-211ENST00000569950 GLTPD2A6NH11 291 aa11.38□□□□□ -0.59
VPS35-211ENST00000569950 IFIT2P09913 472 aaKnown RBP11.38□□□□□ -0.59
VPS35-211ENST00000569950 FKBP1AP62942 108 aaKnown RBP11.38□□□□□ -0.59
VPS35-211ENST00000569950 TTLL5Q6EMB2 1281 aa11.38□□□□□ -0.59
VPS35-211ENST00000569950 RSBN1LQ6PCB5 846 aaPredicted RBP11.38□□□□□ -0.59
VPS35-211ENST00000569950 TBC1D9Q6ZT07 1266 aa11.38□□□□□ -0.59
VPS35-211ENST00000569950 GPC2Q8N158 579 aa11.38□□□□□ -0.59
VPS35-211ENST00000569950 ZBED3Q96IU2 234 aaPredicted RBP11.38□□□□□ -0.59
VPS35-211ENST00000569950 EGFRP00533 1210 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 CHGBP05060 677 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 UQCRFS1P1P0C7P4 283 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 PRDX5P30044 214 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 GMPSP49915 693 aaPredicted RBP11.37□□□□□ -0.59
VPS35-211ENST00000569950 CCDC158Q5M9N0 1113 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 TTC39AQ5SRH9 613 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 HAUS7Q99871 368 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 BCL11AQ9H165 835 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 DENND2AQ9ULE3 1009 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 PCDHAC2Q9Y5I4 1007 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 GTF3C3Q9Y5Q9 886 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 FOCADQ5VW36 1801 aa11.37□□□□□ -0.59
VPS35-211ENST00000569950 GSPT1P15170 499 aaKnown RBP11.36□□□□□ -0.59
VPS35-211ENST00000569950 EIF6P56537 245 aaKnown RBP11.36□□□□□ -0.59
VPS35-211ENST00000569950 ZNF280AP59817 542 aaPredicted RBP11.36□□□□□ -0.59
VPS35-211ENST00000569950 CHAF1AQ13111 956 aaPredicted RBP11.36□□□□□ -0.59
VPS35-211ENST00000569950 MFSD14BQ5SR56 506 aa11.36□□□□□ -0.59
VPS35-211ENST00000569950 GORABQ5T7V8 394 aa11.36□□□□□ -0.59
VPS35-211ENST00000569950 VPS37DQ86XT2 251 aa11.36□□□□□ -0.59
VPS35-211ENST00000569950 DPF2Q92785 391 aa11.36□□□□□ -0.59
VPS35-211ENST00000569950 BOLA2Q9H3K6 86 aa11.36□□□□□ -0.59
VPS35-211ENST00000569950 GNL3LQ9NVN8 582 aaKnown RBP11.36□□□□□ -0.59
VPS35-211ENST00000569950 EPS15P42566 896 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 TNIP1Q15025 636 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 SLFNL1Q499Z3 407 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 ADGRA1Q86SQ6 560 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 AGBL3Q8NEM8 1001 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 WDR66Q8TBY9 1149 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 GPRC5DQ9NZD1 345 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 GJA3Q9Y6H8 435 aa11.35□□□□□ -0.59
VPS35-211ENST00000569950 TCRBV5S4A2TA0A5A2 114 aa11.34□□□□□ -0.59
VPS35-211ENST00000569950 RPS12P25398 132 aaKnown RBP11.34□□□□□ -0.59
VPS35-211ENST00000569950 HIRAP54198 1017 aaPredicted RBP11.34□□□□□ -0.59
VPS35-211ENST00000569950 DIXDC1Q155Q3 683 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms