RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 CIAO1O76071 339 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 MCAMP43121 646 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 KIAA2012Q0VF49 1180 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 DZIP3Q86Y13 1208 aaKnown RBP10.28□□□□□ -0.76
LINC00558-201ENST00000569422 INCENPQ9NQS7 918 aa10.28□□□□□ -0.76
LINC00558-201ENST00000569422 MAP3K15Q6ZN16 1313 aa10.27□□□□□ -0.76
LINC00558-201ENST00000569422 MRC1P22897 1456 aa10.27□□□□□ -0.76
LINC00558-201ENST00000569422 KLF18A0A0U1RQI7 1052 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 ZNF213O14771 459 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 PRC1O43663 620 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 ME1P48163 572 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 SASS6Q6UVJ0 657 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 FUCA2Q9BTY2 467 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 DNAJC25Q9H1X3 360 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 ALDH8A1Q9H2A2 487 aaPredicted RBP10.27□□□□□ -0.77
LINC00558-201ENST00000569422 PALLDQ8WX93 1383 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 CRYBG1Q9Y4K1 1723 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 GOLGA8BA8MQT2 603 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 CPLX1O14810 134 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 EXOSC10Q01780 885 aaKnown RBP10.27□□□□□ -0.77
LINC00558-201ENST00000569422 UVSSAQ2YD98 709 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 USP28Q96RU2 1077 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 IQSEC3Q9UPP2 1182 aaPredicted RBP10.27□□□□□ -0.77
LINC00558-201ENST00000569422 MRVI1Q9Y6F6 885 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 ADAMTS7Q9UKP4 1686 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 JCADQ9P266 1359 aa10.27□□□□□ -0.77
LINC00558-201ENST00000569422 PHKA1P46020 1223 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 GPATCH11Q8N954 259 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 TEX13AQ9BXU3 409 aaPredicted RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 NUTM2BA6NNL0 878 aaPredicted RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 NUTM2EB1AL46 878 aaPredicted RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 ZNF500O60304 480 aaPredicted RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 CTSWP56202 376 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 NUTM2AQ8IVF1 878 aaPredicted RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 CCAR1Q8IX12 1150 aaKnown RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 TOMM22Q9NS69 142 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 FAM13BQ9NYF5 915 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 PRDM4Q9UKN5 801 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 CFAP45Q9UL16 551 aa10.26□□□□□ -0.77
LINC00558-201ENST00000569422 AFDNP55196 1824 aaKnown RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 PATL2C9JE40 543 aaKnown RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 CYP19A1P11511 503 aaPredicted RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 LRRFIP1Q32MZ4 808 aaKnown RBP10.26□□□□□ -0.77
LINC00558-201ENST00000569422 FOXP2O15409 715 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 SF3A1Q15459 793 aaKnown RBP10.25□□□□□ -0.77
LINC00558-201ENST00000569422 NKX2-3Q8TAU0 364 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 APPBP2Q92624 585 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 TRIM5Q9C035 493 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 ZSCAN16Q9H4T2 348 aaPredicted RBP10.25□□□□□ -0.77
LINC00558-201ENST00000569422 CBX8Q9HC52 389 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 PIH1D3Q9NQM4 214 aaKnown RBP10.25□□□□□ -0.77
LINC00558-201ENST00000569422 SEC31BQ9NQW1 1179 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 CTNNA3Q9UI47 895 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 RIPOR2Q9Y4F9 1068 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 KCPQ6ZWJ8 1503 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 CSF1RP07333 972 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 KCNQ4P56696 695 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 SMARCC2Q8TAQ2 1214 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 FAM200AQ8TCP9 573 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 MYL10Q9BUA6 226 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 ELP1O95163 1332 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 ARFGEF2Q9Y6D5 1785 aa10.25□□□□□ -0.77
LINC00558-201ENST00000569422 UQCRHLA0A096LP55 91 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 UQCRHP07919 91 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 MCM5P33992 734 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 ZNF165P49910 485 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 HMGN5P82970 282 aaKnown RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 TRDNQ13061 729 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 HSP90AA2PQ14568 343 aaPredicted RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 RRP12Q5JTH9 1297 aaKnown RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 CCDC102BQ68D86 513 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 SMIM5Q71RC9 77 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 AIFM3Q96NN9 605 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 WWC3Q9ULE0 1092 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 KIF3AQ9Y496 699 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 FDPSP14324 419 aaKnown RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 CCDC82Q8N4S0 544 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 NCOA7Q8NI08 942 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 LMTK3Q96Q04 1460 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 MPHOSPH8Q99549 860 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 GOLPH3LQ9H4A5 285 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 CLSTN2Q9H4D0 955 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 ZNF532Q9HCE3 1301 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 DDX19AQ9NUU7 478 aaKnown RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 ORC3Q9UBD5 711 aaPredicted RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 A0A1B0GVL5 298 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 ADD1P35611 737 aaKnown RBP10.24□□□□□ -0.77
LINC00558-201ENST00000569422 ATP6V1AP38606 617 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 NFXL1Q6ZNB6 911 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 CCDC73Q6ZRK6 1079 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 MICU3Q86XE3 530 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 C8orf76Q96K31 380 aa10.24□□□□□ -0.77
LINC00558-201ENST00000569422 RFX7Q2KHR2 1363 aa10.23□□□□□ -0.77
LINC00558-201ENST00000569422 UBN2Q6ZU65 1347 aa10.23□□□□□ -0.77
LINC00558-201ENST00000569422 B4E1Z4 1266 aa10.23□□□□□ -0.77
LINC00558-201ENST00000569422 PDE8BO95263 885 aa10.23□□□□□ -0.77
LINC00558-201ENST00000569422 ZFYP08048 801 aaPredicted RBP10.23□□□□□ -0.77
LINC00558-201ENST00000569422 TRIM28Q13263 835 aaKnown RBP10.23□□□□□ -0.77
LINC00558-201ENST00000569422 NOLC1Q14978 699 aaKnown RBP eCLIP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms