RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 CNTROBQ8N137 903 aa12.18□□□□□ -0.46
CLN6-209ENST00000569336 TRPM4Q8TD43 1214 aa12.18□□□□□ -0.46
CLN6-209ENST00000569336 LPIN2Q92539 896 aa12.18□□□□□ -0.46
CLN6-209ENST00000569336 GMLQ99445 158 aa12.18□□□□□ -0.46
CLN6-209ENST00000569336 COL1A1P02452 1464 aaPredicted RBP12.17□□□□□ -0.46
CLN6-209ENST00000569336 FRAT2O75474 233 aaPredicted RBP12.17□□□□□ -0.46
CLN6-209ENST00000569336 GYG1P46976 350 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 MVPQ14764 893 aaKnown RBP12.17□□□□□ -0.46
CLN6-209ENST00000569336 ATP2B3Q16720 1220 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 SAMD7Q7Z3H4 446 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 PANK1Q8TE04 598 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 MYOZ2Q9NPC6 264 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 CREBZFQ9NS37 354 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 PGAP2Q9UHJ9 254 aa12.17□□□□□ -0.46
CLN6-209ENST00000569336 FAM205AQ6ZU69 1335 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 PITPNM2Q9BZ72 1349 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 MYH8P13535 1937 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 SHTN1A0MZ66 631 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 ZBTB7BO15156 539 aaPredicted RBP12.16□□□□□ -0.46
CLN6-209ENST00000569336 SASH1O94885 1247 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 ITGBL1O95965 494 aaPredicted RBP12.16□□□□□ -0.46
CLN6-209ENST00000569336 FGFR2P21802 821 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 PDE3AQ14432 1141 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 CDC37L1Q7L3B6 337 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 TDRD7Q8NHU6 1098 aaKnown RBP12.16□□□□□ -0.46
CLN6-209ENST00000569336 TBC1D22AQ8WUA7 517 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 DCPSQ96C86 337 aaKnown RBP12.16□□□□□ -0.46
CLN6-209ENST00000569336 FAM84BQ96KN1 310 aaPredicted RBP12.16□□□□□ -0.46
CLN6-209ENST00000569336 PA2G4Q9UQ80 394 aaKnown RBP12.16□□□□□ -0.46
CLN6-209ENST00000569336 AKAP2Q9Y2D5 859 aa12.16□□□□□ -0.46
CLN6-209ENST00000569336 PNMA6EA0A0J9YXQ4 647 aa12.15□□□□□ -0.46
CLN6-209ENST00000569336 TMEM88BA6NKF7 163 aa12.15□□□□□ -0.46
CLN6-209ENST00000569336 HIRAP54198 1017 aaPredicted RBP12.15□□□□□ -0.46
CLN6-209ENST00000569336 G3BP1Q13283 466 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLN6-209ENST00000569336 KIAA0825Q8IV33 1275 aa12.15□□□□□ -0.46
CLN6-209ENST00000569336 SSH3Q8TE77 659 aa12.15□□□□□ -0.46
CLN6-209ENST00000569336 GNL3LQ9NVN8 582 aaKnown RBP12.15□□□□□ -0.46
CLN6-209ENST00000569336 GGA3Q9NZ52 723 aa12.15□□□□□ -0.46
CLN6-209ENST00000569336 MAST3O60307 1309 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 FOXN1O15353 648 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 EGFRP00533 1210 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 MLLT1Q03111 559 aaPredicted RBP12.14□□□□□ -0.47
CLN6-209ENST00000569336 OS9Q13438 667 aaPredicted RBP12.14□□□□□ -0.47
CLN6-209ENST00000569336 MFSD14BQ5SR56 506 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 RBM26Q5T8P6 1007 aaKnown RBP12.14□□□□□ -0.47
CLN6-209ENST00000569336 FBXO33Q7Z6M2 555 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 SULF1Q8IWU6 871 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 AIDAQ96BJ3 306 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 C1orf115Q9H7X2 142 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 MKRN1Q9UHC7 482 aaKnown RBP12.14□□□□□ -0.47
CLN6-209ENST00000569336 ATAD5Q96QE3 1844 aa12.14□□□□□ -0.47
CLN6-209ENST00000569336 MYH1P12882 1939 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 SEMA3EO15041 775 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 ATP8B2P98198 1209 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 POLA2Q14181 598 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 KRT26Q7Z3Y9 468 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 MXD3Q9BW11 206 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 GLIS2Q9BZE0 524 aaPredicted RBP12.13□□□□□ -0.47
CLN6-209ENST00000569336 COG6Q9Y2V7 657 aa12.13□□□□□ -0.47
CLN6-209ENST00000569336 A0A1B0GUL7 405 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 MYO1BO43795 1136 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 HMMRO75330 724 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 BCAMP50895 628 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 TFCP2Q12800 502 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 CHAF1AQ13111 956 aaPredicted RBP12.12□□□□□ -0.47
CLN6-209ENST00000569336 SCARF1Q14162 830 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 DLGAP5Q15398 846 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 CEP85Q6P2H3 762 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 APOBEC3FQ8IUX4 373 aaKnown RBP12.12□□□□□ -0.47
CLN6-209ENST00000569336 CERS5Q8N5B7 392 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 WDR66Q8TBY9 1149 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 PRDM10Q9NQV6 1147 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 IQSEC3Q9UPP2 1182 aaPredicted RBP12.12□□□□□ -0.47
CLN6-209ENST00000569336 SUGT1Q9Y2Z0 365 aa12.12□□□□□ -0.47
CLN6-209ENST00000569336 CNTNAP1P78357 1384 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 CCDC85CA6NKD9 419 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 TRAF5O00463 557 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 WNT10BO00744 389 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 ZBTB22O15209 634 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 SURF6O75683 361 aaKnown RBP12.11□□□□□ -0.47
CLN6-209ENST00000569336 CTCFP49711 727 aaPredicted RBP12.11□□□□□ -0.47
CLN6-209ENST00000569336 HSP90AB4PQ58FF6 505 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 ANGEL2Q5VTE6 544 aaKnown RBP12.11□□□□□ -0.47
CLN6-209ENST00000569336 ERC1Q8IUD2 1116 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 MTMR14Q8NCE2 650 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 ABHD8Q96I13 439 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 ZBTB40Q9NUA8 1239 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 SERPINA10Q9UK55 444 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 ABT1Q9ULW3 272 aaKnown RBP12.11□□□□□ -0.47
CLN6-209ENST00000569336 TTF2Q9UNY4 1162 aaKnown RBP12.11□□□□□ -0.47
CLN6-209ENST00000569336 JAG2Q9Y219 1238 aa12.11□□□□□ -0.47
CLN6-209ENST00000569336 PDS5AQ29RF7 1337 aaKnown RBP12.11□□□□□ -0.47
CLN6-209ENST00000569336 F8W031 263 aaPredicted RBP12.1□□□□□ -0.47
CLN6-209ENST00000569336 CELF2O95319 508 aaKnown RBP12.1□□□□□ -0.47
CLN6-209ENST00000569336 NBPF9Q3BBW0 867 aa12.1□□□□□ -0.47
CLN6-209ENST00000569336 GORABQ5T7V8 394 aa12.1□□□□□ -0.47
CLN6-209ENST00000569336 RPAP2Q8IXW5 612 aaPredicted RBP12.1□□□□□ -0.47
CLN6-209ENST00000569336 ZGPATQ8N5A5 531 aaKnown RBP12.1□□□□□ -0.47
CLN6-209ENST00000569336 GPR108Q9NPR9 543 aa12.1□□□□□ -0.47
CLN6-209ENST00000569336 DENND2AQ9ULE3 1009 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms