RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SPEF2Q9C093 1822 aa17.53■□□□□ 0.4
CLN3-235ENST00000568497 BRCA2P51587 3418 aa17.53■□□□□ 0.4
CLN3-235ENST00000568497 H0YGN5 161 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 GRM8O00222 908 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 FOXO4P98177 505 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 SPRYD7Q5W111 196 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 ARMC5Q96C12 935 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 KAZALD1Q96I82 304 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 C9orf78Q9NZ63 289 aaPredicted RBP17.52■□□□□ 0.4
CLN3-235ENST00000568497 GGA1Q9UJY5 639 aa17.52■□□□□ 0.4
CLN3-235ENST00000568497 CEP290O15078 2479 aa17.52■□□□□ 0.39
CLN3-235ENST00000568497 PSME4Q14997 1843 aa17.51■□□□□ 0.39
CLN3-235ENST00000568497 PTPRCP08575 1304 aa17.51■□□□□ 0.39
CLN3-235ENST00000568497 MANSC4A6NHS7 340 aaPredicted RBP17.51■□□□□ 0.39
CLN3-235ENST00000568497 RPS8P62241 208 aaKnown RBP17.51■□□□□ 0.39
CLN3-235ENST00000568497 CHRDL2Q6WN34 429 aa17.51■□□□□ 0.39
CLN3-235ENST00000568497 IFNL1Q8IU54 200 aa17.51■□□□□ 0.39
CLN3-235ENST00000568497 ZNF594Q96JF6 807 aaPredicted RBP17.51■□□□□ 0.39
CLN3-235ENST00000568497 EFCC1Q9HA90 598 aa17.51■□□□□ 0.39
CLN3-235ENST00000568497 SZT2Q5T011 3432 aa17.5■□□□□ 0.39
CLN3-235ENST00000568497 PLIN1O60240 522 aa17.5■□□□□ 0.39
CLN3-235ENST00000568497 SLC4A8Q2Y0W8 1093 aa17.5■□□□□ 0.39
CLN3-235ENST00000568497 ANGEL1Q9UNK9 670 aaKnown RBP17.5■□□□□ 0.39
CLN3-235ENST00000568497 USP17L3A6NCW0 530 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 USP17L4A6NCW7 530 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 CT47B1P0C2W7 299 aaPredicted RBP17.49■□□□□ 0.39
CLN3-235ENST00000568497 TRIM27P14373 513 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 CCDC152Q4G0S7 254 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 LMBR1LQ6UX01 489 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 USP17L1Q7RTZ2 530 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 OGFOD1Q8N543 542 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 FBXW7Q969H0 707 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 MYH3P11055 1940 aa17.49■□□□□ 0.39
CLN3-235ENST00000568497 SNAP23O00161 211 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 ALDH1L1O75891 902 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 MYCP01106 439 aaPredicted RBP17.48■□□□□ 0.39
CLN3-235ENST00000568497 RLBP1P12271 317 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 INHBEP58166 350 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 OTUD5Q96G74 571 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 USP44Q9H0E7 712 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 FZD1Q9UP38 647 aa17.48■□□□□ 0.39
CLN3-235ENST00000568497 IGF2BP3O00425 579 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-235ENST00000568497 WNT10BO00744 389 aa17.47■□□□□ 0.39
CLN3-235ENST00000568497 SASH1O94885 1247 aa17.47■□□□□ 0.39
CLN3-235ENST00000568497 ITGA6P23229 1130 aa17.47■□□□□ 0.39
CLN3-235ENST00000568497 SLC9C1Q4G0N8 1177 aa17.47■□□□□ 0.39
CLN3-235ENST00000568497 SLC10A4Q96EP9 437 aa17.47■□□□□ 0.39
CLN3-235ENST00000568497 MEIS3Q99687 375 aa17.47■□□□□ 0.39
CLN3-235ENST00000568497 BICC1Q9H694 974 aaKnown RBP17.47■□□□□ 0.39
CLN3-235ENST00000568497 CRHR2Q13324 411 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 LDLRAD1Q5T700 205 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 PODNQ7Z5L7 613 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 NBPF11Q86T75 865 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 TMEM57Q8N5G2 664 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 ANKRD44Q8N8A2 993 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 KLHDC4Q8TBB5 520 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 ZNF333Q96JL9 665 aa17.46■□□□□ 0.39
CLN3-235ENST00000568497 API5Q9BZZ5 524 aaKnown RBP17.46■□□□□ 0.39
CLN3-235ENST00000568497 CSF1RP07333 972 aa17.45■□□□□ 0.38
CLN3-235ENST00000568497 SP3Q02447 781 aa17.45■□□□□ 0.38
CLN3-235ENST00000568497 OTUD7BQ6GQQ9 843 aa17.45■□□□□ 0.38
CLN3-235ENST00000568497 APOBEC3FQ8IUX4 373 aaKnown RBP17.45■□□□□ 0.38
CLN3-235ENST00000568497 ANKRD18AQ8IVF6 992 aa17.45■□□□□ 0.38
CLN3-235ENST00000568497 HELBQ8NG08 1087 aaPredicted RBP17.45■□□□□ 0.38
CLN3-235ENST00000568497 PANK1Q8TE04 598 aa17.45■□□□□ 0.38
CLN3-235ENST00000568497 PLA2G12BQ9BX93 195 aa17.45■□□□□ 0.38
CLN3-235ENST00000568497 RBM27Q9P2N5 1060 aaKnown RBP17.45■□□□□ 0.38
CLN3-235ENST00000568497 ZBTB48P10074 688 aaPredicted RBP17.44■□□□□ 0.38
CLN3-235ENST00000568497 ATF7IPQ6VMQ6 1270 aa17.44■□□□□ 0.38
CLN3-235ENST00000568497 WNK4Q96J92 1243 aa17.44■□□□□ 0.38
CLN3-235ENST00000568497 MXD3Q9BW11 206 aa17.44■□□□□ 0.38
CLN3-235ENST00000568497 PUS3Q9BZE2 481 aaKnown RBP17.44■□□□□ 0.38
CLN3-235ENST00000568497 KIF16BQ96L93 1317 aa17.44■□□□□ 0.38
CLN3-235ENST00000568497 KLRK1P26718 216 aa17.43■□□□□ 0.38
CLN3-235ENST00000568497 MMP14P50281 582 aa17.43■□□□□ 0.38
CLN3-235ENST00000568497 CLMNQ96JQ2 1002 aa17.43■□□□□ 0.38
CLN3-235ENST00000568497 C1orf115Q9H7X2 142 aa17.43■□□□□ 0.38
CLN3-235ENST00000568497 LRRFIP2Q9Y608 721 aaKnown RBP17.43■□□□□ 0.38
CLN3-235ENST00000568497 PTCH2Q9Y6C5 1203 aa17.43■□□□□ 0.38
CLN3-235ENST00000568497 XDHP47989 1333 aa17.43■□□□□ 0.38
CLN3-235ENST00000568497 ZKSCAN2Q63HK3 967 aa17.42■□□□□ 0.38
CLN3-235ENST00000568497 DPF3Q92784 378 aa17.42■□□□□ 0.38
CLN3-235ENST00000568497 RCAN3Q9UKA8 241 aa17.42■□□□□ 0.38
CLN3-235ENST00000568497 UTYO14607 1347 aa17.42■□□□□ 0.38
CLN3-235ENST00000568497 TAF5LO75529 589 aa17.41■□□□□ 0.38
CLN3-235ENST00000568497 HSP90B1P14625 803 aaKnown RBP17.41■□□□□ 0.38
CLN3-235ENST00000568497 ATP2B4P23634 1241 aa17.41■□□□□ 0.38
CLN3-235ENST00000568497 CCT4P50991 539 aaKnown RBP17.41■□□□□ 0.38
CLN3-235ENST00000568497 C20orf194Q5TEA3 1177 aa17.41■□□□□ 0.38
CLN3-235ENST00000568497 MINPP1Q9UNW1 487 aa17.41■□□□□ 0.38
CLN3-235ENST00000568497 MYO3BQ8WXR4 1341 aa17.41■□□□□ 0.38
CLN3-235ENST00000568497 ANKRD18BA2A2Z9 1011 aa17.4■□□□□ 0.38
CLN3-235ENST00000568497 PPP1R12BO60237 982 aaPredicted RBP17.4■□□□□ 0.38
CLN3-235ENST00000568497 CAP1Q01518 475 aa17.4■□□□□ 0.38
CLN3-235ENST00000568497 ARHGEF6Q15052 776 aa17.4■□□□□ 0.38
CLN3-235ENST00000568497 MAP3K11Q16584 847 aa17.4■□□□□ 0.38
CLN3-235ENST00000568497 DACT2Q5SW24 774 aa17.4■□□□□ 0.38
CLN3-235ENST00000568497 CDC5LQ99459 802 aaKnown RBP17.4■□□□□ 0.38
CLN3-235ENST00000568497 LAMB1P07942 1786 aa17.4■□□□□ 0.38
CLN3-235ENST00000568497 UBTFL1P0CB47 393 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms