RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 GMLQ99445 158 aa27.02■■□□□ 1.92
CLN3-234ENST00000568472 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.02■■□□□ 1.92
CLN3-234ENST00000568472 ADORA1P30542 326 aa27.01■■□□□ 1.91
CLN3-234ENST00000568472 ADARB2Q9NS39 739 aaKnown RBP27.01■■□□□ 1.91
CLN3-234ENST00000568472 USP50Q70EL3 339 aaPredicted RBP27■■□□□ 1.91
CLN3-234ENST00000568472 OGFOD1Q8N543 542 aa27■■□□□ 1.91
CLN3-234ENST00000568472 LRRCC1Q9C099 1032 aa27■■□□□ 1.91
CLN3-234ENST00000568472 DENND2AQ9ULE3 1009 aa27■■□□□ 1.91
CLN3-234ENST00000568472 USP17L8P0C7I0 530 aa26.99■■□□□ 1.91
CLN3-234ENST00000568472 EPS15P42566 896 aa26.99■■□□□ 1.91
CLN3-234ENST00000568472 PHKA1P46020 1223 aa26.99■■□□□ 1.91
CLN3-234ENST00000568472 CCDC158Q5M9N0 1113 aa26.99■■□□□ 1.91
CLN3-234ENST00000568472 MICALL2Q8IY33 904 aa26.99■■□□□ 1.91
CLN3-234ENST00000568472 RWDD1Q9H446 243 aaPredicted RBP26.99■■□□□ 1.91
CLN3-234ENST00000568472 SCN4AP35499 1836 aa26.99■■□□□ 1.91
CLN3-234ENST00000568472 TOMM70O94826 608 aa26.98■■□□□ 1.91
CLN3-234ENST00000568472 UQCRFS1P1P0C7P4 283 aa26.98■■□□□ 1.91
CLN3-234ENST00000568472 WDR66Q8TBY9 1149 aa26.98■■□□□ 1.91
CLN3-234ENST00000568472 EAF2Q96CJ1 260 aaPredicted RBP26.98■■□□□ 1.91
CLN3-234ENST00000568472 PDS5AQ29RF7 1337 aaKnown RBP26.97■■□□□ 1.91
CLN3-234ENST00000568472 SCN9AQ15858 1988 aa26.97■■□□□ 1.91
CLN3-234ENST00000568472 APBB1O00213 710 aa26.97■■□□□ 1.91
CLN3-234ENST00000568472 ZNF280AP59817 542 aaPredicted RBP26.97■■□□□ 1.91
CLN3-234ENST00000568472 HDAC9Q9UKV0 1011 aa26.97■■□□□ 1.91
CLN3-234ENST00000568472 IQSEC3Q9UPP2 1182 aaPredicted RBP26.97■■□□□ 1.91
CLN3-234ENST00000568472 SUGT1Q9Y2Z0 365 aa26.97■■□□□ 1.91
CLN3-234ENST00000568472 IRX6P78412 446 aaPredicted RBP26.96■■□□□ 1.91
CLN3-234ENST00000568472 MFSD14BQ5SR56 506 aa26.96■■□□□ 1.91
CLN3-234ENST00000568472 AACSQ86V21 672 aa26.96■■□□□ 1.91
CLN3-234ENST00000568472 GCC1Q96CN9 775 aa26.96■■□□□ 1.91
CLN3-234ENST00000568472 ZNF512BQ96KM6 892 aaPredicted RBP26.96■■□□□ 1.91
CLN3-234ENST00000568472 IL1RAPL2Q9NP60 686 aa26.96■■□□□ 1.91
CLN3-234ENST00000568472 IFIT2P09913 472 aaKnown RBP26.95■■□□□ 1.9
CLN3-234ENST00000568472 CHAF1AQ13111 956 aaPredicted RBP26.95■■□□□ 1.9
CLN3-234ENST00000568472 DBNDD2Q9BQY9 259 aa26.95■■□□□ 1.9
CLN3-234ENST00000568472 PSME4Q14997 1843 aa26.95■■□□□ 1.9
CLN3-234ENST00000568472 ARID4AP29374 1257 aaPredicted RBP26.94■■□□□ 1.9
CLN3-234ENST00000568472 LDHDQ86WU2 507 aa26.94■■□□□ 1.9
CLN3-234ENST00000568472 CERS5Q8N5B7 392 aa26.94■■□□□ 1.9
CLN3-234ENST00000568472 RBM46Q8TBY0 533 aaKnown RBP26.94■■□□□ 1.9
CLN3-234ENST00000568472 MXD3Q9BW11 206 aa26.94■■□□□ 1.9
CLN3-234ENST00000568472 CCDC8Q9H0W5 538 aaPredicted RBP26.94■■□□□ 1.9
CLN3-234ENST00000568472 DBNLQ9UJU6 430 aaKnown RBP26.94■■□□□ 1.9
CLN3-234ENST00000568472 ARAP2Q8WZ64 1704 aa26.93■■□□□ 1.9
CLN3-234ENST00000568472 TTC39AQ5SRH9 613 aa26.93■■□□□ 1.9
CLN3-234ENST00000568472 ZGPATQ8N5A5 531 aaKnown RBP26.93■■□□□ 1.9
CLN3-234ENST00000568472 ZC3H15Q8WU90 426 aaKnown RBP26.93■■□□□ 1.9
CLN3-234ENST00000568472 SALL1Q9NSC2 1324 aa26.92■■□□□ 1.9
CLN3-234ENST00000568472 RASGRF1Q13972 1273 aa26.92■■□□□ 1.9
CLN3-234ENST00000568472 EAPPQ56P03 285 aaPredicted RBP26.92■■□□□ 1.9
CLN3-234ENST00000568472 KIAA0825Q8IV33 1275 aa26.92■■□□□ 1.9
CLN3-234ENST00000568472 JAG2Q9Y219 1238 aa26.92■■□□□ 1.9
CLN3-234ENST00000568472 MYOZ2Q9NPC6 264 aa26.91■■□□□ 1.9
CLN3-234ENST00000568472 ZBTB47Q9UFB7 747 aaPredicted RBP26.91■■□□□ 1.9
CLN3-234ENST00000568472 FSTL1Q12841 308 aa26.9■■□□□ 1.9
CLN3-234ENST00000568472 SPATA5Q8NB90 893 aa26.9■■□□□ 1.9
CLN3-234ENST00000568472 SMC1BQ8NDV3 1235 aa26.9■■□□□ 1.9
CLN3-234ENST00000568472 MRIQ9BWK5 157 aa26.9■■□□□ 1.9
CLN3-234ENST00000568472 HDLBPQ00341 1268 aaKnown RBP26.89■■□□□ 1.9
CLN3-234ENST00000568472 KIF4BQ2VIQ3 1234 aa26.89■■□□□ 1.9
CLN3-234ENST00000568472 SPTY2D1Q68D10 685 aaPredicted RBP26.89■■□□□ 1.9
CLN3-234ENST00000568472 SAMD7Q7Z3H4 446 aa26.89■■□□□ 1.9
CLN3-234ENST00000568472 HMG20BQ9P0W2 317 aa26.89■■□□□ 1.9
CLN3-234ENST00000568472 CLEC11AQ9Y240 323 aa26.89■■□□□ 1.9
CLN3-234ENST00000568472 MAST3O60307 1309 aa26.89■■□□□ 1.89
CLN3-234ENST00000568472 SHTN1A0MZ66 631 aa26.88■■□□□ 1.89
CLN3-234ENST00000568472 TBC1D10BQ4KMP7 808 aaPredicted RBP26.88■■□□□ 1.89
CLN3-234ENST00000568472 CHADLQ6NUI6 762 aa26.88■■□□□ 1.89
CLN3-234ENST00000568472 MTMR14Q8NCE2 650 aa26.88■■□□□ 1.89
CLN3-234ENST00000568472 TLR7Q9NYK1 1049 aaKnown RBP26.88■■□□□ 1.89
CLN3-234ENST00000568472 PGAP2Q9UHJ9 254 aa26.88■■□□□ 1.89
CLN3-234ENST00000568472 SERPINA10Q9UK55 444 aa26.88■■□□□ 1.89
CLN3-234ENST00000568472 TTF2Q9UNY4 1162 aaKnown RBP26.88■■□□□ 1.89
CLN3-234ENST00000568472 IGSF3O75054 1194 aa26.87■■□□□ 1.89
CLN3-234ENST00000568472 NEFLP07196 543 aa26.87■■□□□ 1.89
CLN3-234ENST00000568472 TRPM4Q8TD43 1214 aa26.87■■□□□ 1.89
CLN3-234ENST00000568472 MCAMP43121 646 aa26.86■■□□□ 1.89
CLN3-234ENST00000568472 HIRAP54198 1017 aaPredicted RBP26.86■■□□□ 1.89
CLN3-234ENST00000568472 RBM26Q5T8P6 1007 aaKnown RBP26.86■■□□□ 1.89
CLN3-234ENST00000568472 SMC5Q8IY18 1101 aa26.86■■□□□ 1.89
CLN3-234ENST00000568472 F8W031 263 aaPredicted RBP26.85■■□□□ 1.89
CLN3-234ENST00000568472 SMARCA5O60264 1052 aaPredicted RBP26.85■■□□□ 1.89
CLN3-234ENST00000568472 LDHBP07195 334 aaKnown RBP26.85■■□□□ 1.89
CLN3-234ENST00000568472 DLGAP5Q15398 846 aa26.85■■□□□ 1.89
CLN3-234ENST00000568472 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.85■■□□□ 1.89
CLN3-234ENST00000568472 COL1A1P02452 1464 aaPredicted RBP26.85■■□□□ 1.89
CLN3-234ENST00000568472 ZNF646O15015 1829 aaPredicted RBP26.84■■□□□ 1.89
CLN3-234ENST00000568472 ANKRD45Q5TZF3 282 aa26.84■■□□□ 1.89
CLN3-234ENST00000568472 GPATCH3Q96I76 525 aa26.84■■□□□ 1.89
CLN3-234ENST00000568472 IGHDP01880 384 aa26.83■■□□□ 1.89
CLN3-234ENST00000568472 POTEIP0CG38 1075 aa26.83■■□□□ 1.89
CLN3-234ENST00000568472 POTEJP0CG39 1038 aa26.83■■□□□ 1.89
CLN3-234ENST00000568472 SCARF1Q14162 830 aa26.83■■□□□ 1.89
CLN3-234ENST00000568472 ABCF2Q9UG63 623 aa26.83■■□□□ 1.89
CLN3-234ENST00000568472 EGFRP00533 1210 aa26.82■■□□□ 1.88
CLN3-234ENST00000568472 SLF2Q8IX21 1173 aa26.82■■□□□ 1.88
CLN3-234ENST00000568472 TEKT1Q969V4 418 aa26.82■■□□□ 1.88
CLN3-234ENST00000568472 BCL11AQ9H165 835 aa26.82■■□□□ 1.88
CLN3-234ENST00000568472 WNT10BO00744 389 aa26.81■■□□□ 1.88
CLN3-234ENST00000568472 ATP5JP18859 108 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms