RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 APOBEC3FQ8IUX4 373 aaKnown RBP20.3■□□□□ 0.84
CLN3-229ENST00000567963 NF2P35240 595 aa20.3■□□□□ 0.84
CLN3-229ENST00000567963 FKBP1AP62942 108 aaKnown RBP20.3■□□□□ 0.84
CLN3-229ENST00000567963 DLGAP5Q15398 846 aa20.3■□□□□ 0.84
CLN3-229ENST00000567963 MTMR14Q8NCE2 650 aa20.3■□□□□ 0.84
CLN3-229ENST00000567963 UBE4AQ14139 1066 aa20.29■□□□□ 0.84
CLN3-229ENST00000567963 TTLL12Q14166 644 aaPredicted RBP20.29■□□□□ 0.84
CLN3-229ENST00000567963 PUS3Q9BZE2 481 aaKnown RBP20.29■□□□□ 0.84
CLN3-229ENST00000567963 MCOLN1Q9GZU1 580 aa20.29■□□□□ 0.84
CLN3-229ENST00000567963 PTPRCP08575 1304 aa20.29■□□□□ 0.84
CLN3-229ENST00000567963 SLFN5Q08AF3 891 aa20.28■□□□□ 0.84
CLN3-229ENST00000567963 RABL6Q3YEC7 729 aaPredicted RBP20.28■□□□□ 0.84
CLN3-229ENST00000567963 SSH1Q8WYL5 1049 aa20.28■□□□□ 0.84
CLN3-229ENST00000567963 BICC1Q9H694 974 aaKnown RBP20.28■□□□□ 0.84
CLN3-229ENST00000567963 CCDC85CA6NKD9 419 aa20.27■□□□□ 0.84
CLN3-229ENST00000567963 F8W031 263 aaPredicted RBP20.27■□□□□ 0.84
CLN3-229ENST00000567963 JAG2Q9Y219 1238 aa20.27■□□□□ 0.84
CLN3-229ENST00000567963 RIPOR2Q9Y4F9 1068 aa20.27■□□□□ 0.84
CLN3-229ENST00000567963 DGKZQ13574 1117 aa20.26■□□□□ 0.83
CLN3-229ENST00000567963 TDRD7Q8NHU6 1098 aaKnown RBP20.26■□□□□ 0.83
CLN3-229ENST00000567963 DEFB129Q9H1M3 183 aa20.26■□□□□ 0.83
CLN3-229ENST00000567963 PCDHAC2Q9Y5I4 1007 aa20.26■□□□□ 0.83
CLN3-229ENST00000567963 CFAP100Q494V2 611 aa20.25■□□□□ 0.83
CLN3-229ENST00000567963 ARMC9Q7Z3E5 817 aa20.25■□□□□ 0.83
CLN3-229ENST00000567963 FAM84BQ96KN1 310 aaPredicted RBP20.25■□□□□ 0.83
CLN3-229ENST00000567963 ECM29Q5VYK3 1845 aa20.25■□□□□ 0.83
CLN3-229ENST00000567963 FAM205AQ6ZU69 1335 aa20.25■□□□□ 0.83
CLN3-229ENST00000567963 MROH5Q6ZUA9 1318 aa20.25■□□□□ 0.83
CLN3-229ENST00000567963 SPDYE2BA6NHP3 402 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 SPDYE6P0CI01 402 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 HIBADHP31937 336 aaKnown RBP20.24■□□□□ 0.83
CLN3-229ENST00000567963 GYG1P46976 350 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 PTPN12Q05209 780 aaKnown RBP20.24■□□□□ 0.83
CLN3-229ENST00000567963 PRKG1Q13976 671 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 ANKRD44Q8N8A2 993 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 PRMT6Q96LA8 375 aaPredicted RBP20.24■□□□□ 0.83
CLN3-229ENST00000567963 COL1A1P02452 1464 aaPredicted RBP20.24■□□□□ 0.83
CLN3-229ENST00000567963 MYO1BO43795 1136 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 CDCA7LQ96GN5 454 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 USP44Q9H0E7 712 aa20.24■□□□□ 0.83
CLN3-229ENST00000567963 ALDH1L2Q3SY69 923 aa20.23■□□□□ 0.83
CLN3-229ENST00000567963 LRRC24Q50LG9 513 aa20.23■□□□□ 0.83
CLN3-229ENST00000567963 LDLRAD1Q5T700 205 aa20.23■□□□□ 0.83
CLN3-229ENST00000567963 PPP2R3BQ9Y5P8 575 aa20.23■□□□□ 0.83
CLN3-229ENST00000567963 CLRN2A0PK11 232 aa20.22■□□□□ 0.83
CLN3-229ENST00000567963 TM4SF4P48230 202 aa20.22■□□□□ 0.83
CLN3-229ENST00000567963 RBM5P52756 815 aaKnown RBP eCLIP20.22■□□□□ 0.83
CLN3-229ENST00000567963 MFSD14BQ5SR56 506 aa20.22■□□□□ 0.83
CLN3-229ENST00000567963 ANGEL1Q9UNK9 670 aaKnown RBP20.22■□□□□ 0.83
CLN3-229ENST00000567963 TRMT2AQ8IZ69 625 aaKnown RBP20.21■□□□□ 0.83
CLN3-229ENST00000567963 FZD1Q9UP38 647 aa20.21■□□□□ 0.83
CLN3-229ENST00000567963 AOX1Q06278 1338 aa20.2■□□□□ 0.82
CLN3-229ENST00000567963 MKRN3Q13064 507 aaKnown RBP20.2■□□□□ 0.82
CLN3-229ENST00000567963 MAP3K11Q16584 847 aa20.2■□□□□ 0.82
CLN3-229ENST00000567963 METTL24Q5JXM2 366 aa20.2■□□□□ 0.82
CLN3-229ENST00000567963 FBXO33Q7Z6M2 555 aa20.2■□□□□ 0.82
CLN3-229ENST00000567963 VEZTQ9HBM0 779 aa20.2■□□□□ 0.82
CLN3-229ENST00000567963 PDE8BO95263 885 aa20.19■□□□□ 0.82
CLN3-229ENST00000567963 RGS19P49795 217 aa20.19■□□□□ 0.82
CLN3-229ENST00000567963 VGLL2Q8N8G2 317 aa20.19■□□□□ 0.82
CLN3-229ENST00000567963 KLHDC4Q8TBB5 520 aa20.19■□□□□ 0.82
CLN3-229ENST00000567963 SERPINA10Q9UK55 444 aa20.19■□□□□ 0.82
CLN3-229ENST00000567963 TTF2Q9UNY4 1162 aaKnown RBP20.19■□□□□ 0.82
CLN3-229ENST00000567963 PPP1R12BO60237 982 aaPredicted RBP20.18■□□□□ 0.82
CLN3-229ENST00000567963 SUPT20HL1Q3ZLR7 823 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 VPS37DQ86XT2 251 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 SMC4Q9NTJ3 1288 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 TBC1D8O95759 1140 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 SREBF2Q12772 1141 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 CAVIN4Q5BKX8 364 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 SPRYD7Q5W111 196 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 SLC10A4Q96EP9 437 aa20.18■□□□□ 0.82
CLN3-229ENST00000567963 SSC5DA1L4H1 1573 aa20.17■□□□□ 0.82
CLN3-229ENST00000567963 RASA3Q14644 834 aa20.17■□□□□ 0.82
CLN3-229ENST00000567963 NBPF12Q5TAG4 269 aaPredicted RBP20.17■□□□□ 0.82
CLN3-229ENST00000567963 IQSEC3Q9UPP2 1182 aaPredicted RBP20.17■□□□□ 0.82
CLN3-229ENST00000567963 UNCXA6NJT0 531 aa20.16■□□□□ 0.82
CLN3-229ENST00000567963 CT47B1P0C2W7 299 aaPredicted RBP20.16■□□□□ 0.82
CLN3-229ENST00000567963 SPDYE2Q495Y8 402 aa20.16■□□□□ 0.82
CLN3-229ENST00000567963 CTU1Q7Z7A3 348 aaKnown RBP20.16■□□□□ 0.82
CLN3-229ENST00000567963 DZIP1LQ8IYY4 767 aaKnown RBP20.16■□□□□ 0.82
CLN3-229ENST00000567963 TDRD3Q9H7E2 651 aaKnown RBP20.16■□□□□ 0.82
CLN3-229ENST00000567963 ZNF70Q9UC06 446 aaPredicted RBP20.16■□□□□ 0.82
CLN3-229ENST00000567963 ARAP2Q8WZ64 1704 aa20.16■□□□□ 0.82
CLN3-229ENST00000567963 FRAT2O75474 233 aaPredicted RBP20.15■□□□□ 0.82
CLN3-229ENST00000567963 RFX5P48382 616 aaPredicted RBP20.15■□□□□ 0.82
CLN3-229ENST00000567963 BCAMP50895 628 aa20.15■□□□□ 0.82
CLN3-229ENST00000567963 TNFAIP1Q13829 316 aa20.15■□□□□ 0.82
CLN3-229ENST00000567963 USP2O75604 605 aaPredicted RBP20.14■□□□□ 0.81
CLN3-229ENST00000567963 CRKP46108 304 aa20.14■□□□□ 0.81
CLN3-229ENST00000567963 MLLT1Q03111 559 aaPredicted RBP20.14■□□□□ 0.81
CLN3-229ENST00000567963 CHAF1AQ13111 956 aaPredicted RBP20.14■□□□□ 0.81
CLN3-229ENST00000567963 GRIK5Q16478 980 aa20.14■□□□□ 0.81
CLN3-229ENST00000567963 TBC1D22AQ8WUA7 517 aa20.14■□□□□ 0.81
CLN3-229ENST00000567963 ZNF296Q8WUU4 475 aaPredicted RBP20.14■□□□□ 0.81
CLN3-229ENST00000567963 CLMNQ96JQ2 1002 aa20.14■□□□□ 0.81
CLN3-229ENST00000567963 CCER2I3L3R5 266 aa20.13■□□□□ 0.81
CLN3-229ENST00000567963 ZBTB48P10074 688 aaPredicted RBP20.13■□□□□ 0.81
CLN3-229ENST00000567963 FGFR2P21802 821 aa20.13■□□□□ 0.81
CLN3-229ENST00000567963 IREB2P48200 963 aaKnown RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms