RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 PCDHAC2Q9Y5I4 1007 aa21.75■■□□□ 1.07
CLK3-217ENST00000566126 BABAM1Q9NWV8 329 aa21.74■■□□□ 1.07
CLK3-217ENST00000566126 CCL15-CCL14A0A0B4J2E2 113 aa21.73■■□□□ 1.07
CLK3-217ENST00000566126 GJB1P08034 283 aa21.73■■□□□ 1.07
CLK3-217ENST00000566126 PRMT2P55345 433 aa21.73■■□□□ 1.07
CLK3-217ENST00000566126 DLGAP5Q15398 846 aa21.73■■□□□ 1.07
CLK3-217ENST00000566126 CCL15Q16663 113 aa21.73■■□□□ 1.07
CLK3-217ENST00000566126 CLSPNQ9HAW4 1339 aa21.73■■□□□ 1.07
CLK3-217ENST00000566126 TLR2O60603 784 aa21.72■■□□□ 1.07
CLK3-217ENST00000566126 CCT4P50991 539 aaKnown RBP21.72■■□□□ 1.07
CLK3-217ENST00000566126 MTMR14Q8NCE2 650 aa21.72■■□□□ 1.07
CLK3-217ENST00000566126 MINPP1Q9UNW1 487 aa21.72■■□□□ 1.07
CLK3-217ENST00000566126 AOX1Q06278 1338 aa21.72■■□□□ 1.07
CLK3-217ENST00000566126 ALPK3Q96L96 1907 aa21.71■■□□□ 1.07
CLK3-217ENST00000566126 CLRN2A0PK11 232 aa21.71■■□□□ 1.07
CLK3-217ENST00000566126 PDE8AO60658 829 aa21.71■■□□□ 1.07
CLK3-217ENST00000566126 GNRH1P01148 92 aa21.71■■□□□ 1.07
CLK3-217ENST00000566126 CTGFP29279 349 aa21.71■■□□□ 1.07
CLK3-217ENST00000566126 KIF22Q14807 665 aa21.71■■□□□ 1.07
CLK3-217ENST00000566126 CCL5P13501 91 aa21.7■■□□□ 1.06
CLK3-217ENST00000566126 HSP90B1P14625 803 aaKnown RBP21.7■■□□□ 1.06
CLK3-217ENST00000566126 GTF2IP78347 998 aa21.7■■□□□ 1.06
CLK3-217ENST00000566126 JARID2Q92833 1246 aaPredicted RBP21.7■■□□□ 1.06
CLK3-217ENST00000566126 MTMR10Q9NXD2 777 aa21.7■■□□□ 1.06
CLK3-217ENST00000566126 FARP2O94887 1054 aaPredicted RBP21.69■■□□□ 1.06
CLK3-217ENST00000566126 KLRK1P26718 216 aa21.69■■□□□ 1.06
CLK3-217ENST00000566126 GTF2A2P52657 109 aa21.69■■□□□ 1.06
CLK3-217ENST00000566126 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.69■■□□□ 1.06
CLK3-217ENST00000566126 EVI5O60447 810 aa21.68■■□□□ 1.06
CLK3-217ENST00000566126 ECM2O94769 699 aaPredicted RBP21.68■■□□□ 1.06
CLK3-217ENST00000566126 PCCAP05165 728 aaPredicted RBP21.68■■□□□ 1.06
CLK3-217ENST00000566126 GRK4P32298 578 aa21.68■■□□□ 1.06
CLK3-217ENST00000566126 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLK3-217ENST00000566126 CERS5Q8N5B7 392 aa21.68■■□□□ 1.06
CLK3-217ENST00000566126 PRMT6Q96LA8 375 aaPredicted RBP21.68■■□□□ 1.06
CLK3-217ENST00000566126 VEZTQ9HBM0 779 aa21.68■■□□□ 1.06
CLK3-217ENST00000566126 RASA3Q14644 834 aa21.67■■□□□ 1.06
CLK3-217ENST00000566126 HDGFL1Q5TGJ6 251 aa21.67■■□□□ 1.06
CLK3-217ENST00000566126 RNF208Q9H0X6 261 aa21.67■■□□□ 1.06
CLK3-217ENST00000566126 BSDC1Q9NW68 430 aaPredicted RBP21.67■■□□□ 1.06
CLK3-217ENST00000566126 SRRDQ9UH36 339 aa21.67■■□□□ 1.06
CLK3-217ENST00000566126 SPDYE2BA6NHP3 402 aa21.66■■□□□ 1.06
CLK3-217ENST00000566126 SPDYE6P0CI01 402 aa21.66■■□□□ 1.06
CLK3-217ENST00000566126 CFAP100Q494V2 611 aa21.66■■□□□ 1.06
CLK3-217ENST00000566126 U2AF1L4Q8WU68 220 aaKnown RBP21.66■■□□□ 1.06
CLK3-217ENST00000566126 CDC5LQ99459 802 aaKnown RBP21.66■■□□□ 1.06
CLK3-217ENST00000566126 GDF15Q99988 308 aa21.66■■□□□ 1.06
CLK3-217ENST00000566126 DBF4Q9UBU7 674 aaPredicted RBP21.66■■□□□ 1.06
CLK3-217ENST00000566126 RIPOR2Q9Y4F9 1068 aa21.66■■□□□ 1.06
CLK3-217ENST00000566126 MAPK8IP3Q9UPT6 1336 aa21.65■■□□□ 1.06
CLK3-217ENST00000566126 BMP8BP34820 402 aa21.65■■□□□ 1.06
CLK3-217ENST00000566126 VGLL4Q14135 290 aa21.65■■□□□ 1.06
CLK3-217ENST00000566126 TRIM47Q96LD4 638 aa21.65■■□□□ 1.06
CLK3-217ENST00000566126 MYO1BO43795 1136 aa21.64■■□□□ 1.05
CLK3-217ENST00000566126 OSBPP22059 807 aa21.64■■□□□ 1.05
CLK3-217ENST00000566126 CDAN1Q8IWY9 1227 aa21.64■■□□□ 1.05
CLK3-217ENST00000566126 LEMD3Q9Y2U8 911 aa21.64■■□□□ 1.05
CLK3-217ENST00000566126 MYH3P11055 1940 aa21.64■■□□□ 1.05
CLK3-217ENST00000566126 BTBD19C9JJ37 291 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 PSMC4P43686 418 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 RIPK4P57078 832 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 C17orf99Q6UX52 265 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 RAET1EQ8TD07 263 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 MYD88Q99836 296 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 ZCCHC17Q9NP64 241 aaKnown RBP21.63■■□□□ 1.05
CLK3-217ENST00000566126 HYPKQ9NX55 129 aa21.63■■□□□ 1.05
CLK3-217ENST00000566126 EYSQ5T1H1 3165 aa21.62■■□□□ 1.05
CLK3-217ENST00000566126 F8W031 263 aaPredicted RBP21.62■■□□□ 1.05
CLK3-217ENST00000566126 WDHD1O75717 1129 aaPredicted RBP21.62■■□□□ 1.05
CLK3-217ENST00000566126 LRIT3Q3SXY7 679 aa21.62■■□□□ 1.05
CLK3-217ENST00000566126 RIC3Q7Z5B4 369 aa21.62■■□□□ 1.05
CLK3-217ENST00000566126 CCDC191Q8NCU4 936 aa21.62■■□□□ 1.05
CLK3-217ENST00000566126 TEPSINQ96N21 525 aa21.62■■□□□ 1.05
CLK3-217ENST00000566126 PRDM6Q9NQX0 595 aa21.62■■□□□ 1.05
CLK3-217ENST00000566126 SGPL1O95470 568 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 BCAMP50895 628 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 CTSWP56202 376 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 MAP3K9P80192 1104 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.61■■□□□ 1.05
CLK3-217ENST00000566126 UNC93B1Q9H1C4 597 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 GREM2Q9H772 168 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 CD209Q9NNX6 404 aa21.61■■□□□ 1.05
CLK3-217ENST00000566126 MYPNQ86TC9 1320 aa21.6■■□□□ 1.05
CLK3-217ENST00000566126 CHL1O00533 1208 aa21.6■■□□□ 1.05
CLK3-217ENST00000566126 UBXN2AP68543 259 aa21.6■■□□□ 1.05
CLK3-217ENST00000566126 TTLL11Q8NHH1 800 aa21.6■■□□□ 1.05
CLK3-217ENST00000566126 BIN2Q9UBW5 565 aaPredicted RBP21.6■■□□□ 1.05
CLK3-217ENST00000566126 SPDYE5A6NIY4 337 aa21.59■■□□□ 1.05
CLK3-217ENST00000566126 HOXB7P09629 217 aa21.59■■□□□ 1.05
CLK3-217ENST00000566126 CETPP11597 493 aa21.59■■□□□ 1.05
CLK3-217ENST00000566126 HOXD10P28358 340 aa21.59■■□□□ 1.05
CLK3-217ENST00000566126 ARAP2Q8WZ64 1704 aa21.59■■□□□ 1.05
CLK3-217ENST00000566126 CWC25Q9NXE8 425 aaPredicted RBP21.59■■□□□ 1.05
CLK3-217ENST00000566126 CPA4Q9UI42 421 aa21.59■■□□□ 1.05
CLK3-217ENST00000566126 HELBQ8NG08 1087 aaPredicted RBP21.58■■□□□ 1.05
CLK3-217ENST00000566126 MGAMO43451 1857 aa21.58■■□□□ 1.04
CLK3-217ENST00000566126 IRS2Q9Y4H2 1338 aa21.57■■□□□ 1.04
CLK3-217ENST00000566126 FMNL1O95466 1100 aaPredicted RBP21.57■■□□□ 1.04
CLK3-217ENST00000566126 GOLGA2Q08379 1002 aa21.57■■□□□ 1.04
CLK3-217ENST00000566126 PNNQ9H307 717 aaKnown RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms