RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HSPA8P11142 646 aaKnown RBP18.69■□□□□ 0.58
CLN3-213ENST00000565047 GYG1P46976 350 aa18.69■□□□□ 0.58
CLN3-213ENST00000565047 PTPN12Q05209 780 aaKnown RBP18.69■□□□□ 0.58
CLN3-213ENST00000565047 FBXO33Q7Z6M2 555 aa18.69■□□□□ 0.58
CLN3-213ENST00000565047 C2orf69Q8N8R5 385 aa18.69■□□□□ 0.58
CLN3-213ENST00000565047 API5Q9BZZ5 524 aaKnown RBP18.69■□□□□ 0.58
CLN3-213ENST00000565047 FGFR2P21802 821 aa18.68■□□□□ 0.58
CLN3-213ENST00000565047 RGMBQ6NW40 437 aa18.68■□□□□ 0.58
CLN3-213ENST00000565047 PAXIP1Q6ZW49 1069 aaPredicted RBP18.68■□□□□ 0.58
CLN3-213ENST00000565047 PCDHAC2Q9Y5I4 1007 aa18.68■□□□□ 0.58
CLN3-213ENST00000565047 HIBADHP31937 336 aaKnown RBP18.67■□□□□ 0.58
CLN3-213ENST00000565047 LBX1P52954 281 aa18.67■□□□□ 0.58
CLN3-213ENST00000565047 GRM1Q13255 1194 aa18.67■□□□□ 0.58
CLN3-213ENST00000565047 PRAMEF18Q5VWM3 479 aa18.67■□□□□ 0.58
CLN3-213ENST00000565047 INTS3Q68E01 1043 aaKnown RBP18.67■□□□□ 0.58
CLN3-213ENST00000565047 ATG9AQ7Z3C6 839 aa18.67■□□□□ 0.58
CLN3-213ENST00000565047 AIDAQ96BJ3 306 aa18.67■□□□□ 0.58
CLN3-213ENST00000565047 FKBP1BP68106 108 aa18.66■□□□□ 0.58
CLN3-213ENST00000565047 TNS4Q8IZW8 715 aa18.66■□□□□ 0.58
CLN3-213ENST00000565047 HDAC9Q9UKV0 1011 aa18.66■□□□□ 0.58
CLN3-213ENST00000565047 JAG2Q9Y219 1238 aa18.66■□□□□ 0.58
CLN3-213ENST00000565047 AOX1Q06278 1338 aa18.66■□□□□ 0.58
CLN3-213ENST00000565047 EYA2O00167 538 aa18.65■□□□□ 0.58
CLN3-213ENST00000565047 BCAR3O75815 825 aa18.65■□□□□ 0.58
CLN3-213ENST00000565047 NOGQ13253 232 aa18.65■□□□□ 0.58
CLN3-213ENST00000565047 METTL24Q5JXM2 366 aa18.65■□□□□ 0.58
CLN3-213ENST00000565047 PRMT6Q96LA8 375 aaPredicted RBP18.65■□□□□ 0.58
CLN3-213ENST00000565047 MEIS3Q99687 375 aa18.65■□□□□ 0.58
CLN3-213ENST00000565047 PAPPA2Q9BXP8 1791 aa18.64■□□□□ 0.57
CLN3-213ENST00000565047 UBTFL1P0CB47 393 aaPredicted RBP18.64■□□□□ 0.57
CLN3-213ENST00000565047 MOB2Q70IA6 237 aa18.64■□□□□ 0.57
CLN3-213ENST00000565047 TNNQ9UQP3 1299 aa18.64■□□□□ 0.57
CLN3-213ENST00000565047 KIF16BQ96L93 1317 aa18.64■□□□□ 0.57
CLN3-213ENST00000565047 SPDYE2BA6NHP3 402 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 SLC10A3P09131 477 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 SPDYE6P0CI01 402 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 TRIM27P14373 513 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 DLGAP5Q15398 846 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 GRIK5Q16478 980 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 CFAP100Q494V2 611 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 CCDC102AQ96A19 550 aa18.63■□□□□ 0.57
CLN3-213ENST00000565047 LRRFIP2Q9Y608 721 aaKnown RBP18.63■□□□□ 0.57
CLN3-213ENST00000565047 F8W031 263 aaPredicted RBP18.62■□□□□ 0.57
CLN3-213ENST00000565047 BCAMP50895 628 aa18.62■□□□□ 0.57
CLN3-213ENST00000565047 ZNF157P51786 506 aaPredicted RBP18.62■□□□□ 0.57
CLN3-213ENST00000565047 MFSD14BQ5SR56 506 aa18.62■□□□□ 0.57
CLN3-213ENST00000565047 APOBEC3FQ8IUX4 373 aaKnown RBP18.62■□□□□ 0.57
CLN3-213ENST00000565047 FBXO3Q9UK99 471 aa18.62■□□□□ 0.57
CLN3-213ENST00000565047 CIAO1O76071 339 aa18.61■□□□□ 0.57
CLN3-213ENST00000565047 PUM3Q15397 648 aaKnown RBP18.61■□□□□ 0.57
CLN3-213ENST00000565047 RASAL3Q86YV0 1011 aa18.61■□□□□ 0.57
CLN3-213ENST00000565047 SERPINA10Q9UK55 444 aa18.61■□□□□ 0.57
CLN3-213ENST00000565047 COL1A1P02452 1464 aaPredicted RBP18.6■□□□□ 0.57
CLN3-213ENST00000565047 UBE2Q2LH0YL09 131 aa18.6■□□□□ 0.57
CLN3-213ENST00000565047 HNRNPUQ00839 825 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLN3-213ENST00000565047 KIF23Q02241 960 aaPredicted RBP18.6■□□□□ 0.57
CLN3-213ENST00000565047 ATF7IPQ6VMQ6 1270 aa18.6■□□□□ 0.57
CLN3-213ENST00000565047 DEFB129Q9H1M3 183 aa18.6■□□□□ 0.57
CLN3-213ENST00000565047 COPRSQ9NQ92 184 aa18.6■□□□□ 0.57
CLN3-213ENST00000565047 ARAP2Q8WZ64 1704 aa18.6■□□□□ 0.57
CLN3-213ENST00000565047 SSC5DA1L4H1 1573 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 ECM29Q5VYK3 1845 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 CA12O43570 354 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 MTX1Q13505 466 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 CAVIN4Q5BKX8 364 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 LDLRAD1Q5T700 205 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 LPIN2Q92539 896 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 CSRNP1Q96S65 589 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 TSKSQ9UJT2 592 aa18.59■□□□□ 0.57
CLN3-213ENST00000565047 IQSEC3Q9UPP2 1182 aaPredicted RBP18.59■□□□□ 0.57
CLN3-213ENST00000565047 ZBTB22O15209 634 aa18.58■□□□□ 0.56
CLN3-213ENST00000565047 IPO8O15397 1037 aaKnown RBP18.58■□□□□ 0.56
CLN3-213ENST00000565047 BEGAINQ9BUH8 593 aa18.58■□□□□ 0.56
CLN3-213ENST00000565047 TTF2Q9UNY4 1162 aaKnown RBP18.58■□□□□ 0.56
CLN3-213ENST00000565047 PA2G4Q9UQ80 394 aaKnown RBP18.58■□□□□ 0.56
CLN3-213ENST00000565047 HDAC5Q9UQL6 1122 aa18.58■□□□□ 0.56
CLN3-213ENST00000565047 PPP2R3BQ9Y5P8 575 aa18.58■□□□□ 0.56
CLN3-213ENST00000565047 CLRN2A0PK11 232 aa18.57■□□□□ 0.56
CLN3-213ENST00000565047 GNAI3P08754 354 aa18.57■□□□□ 0.56
CLN3-213ENST00000565047 IFIT1P09914 478 aaKnown RBP18.57■□□□□ 0.56
CLN3-213ENST00000565047 MAP3K11Q16584 847 aa18.57■□□□□ 0.56
CLN3-213ENST00000565047 MRIQ9BWK5 157 aa18.57■□□□□ 0.56
CLN3-213ENST00000565047 IL15P40933 162 aaPredicted RBP18.56■□□□□ 0.56
CLN3-213ENST00000565047 HDLBPQ00341 1268 aaKnown RBP18.56■□□□□ 0.56
CLN3-213ENST00000565047 SPDYE2Q495Y8 402 aa18.56■□□□□ 0.56
CLN3-213ENST00000565047 VPS37DQ86XT2 251 aa18.56■□□□□ 0.56
CLN3-213ENST00000565047 DZIP1LQ8IYY4 767 aaKnown RBP18.56■□□□□ 0.56
CLN3-213ENST00000565047 TBC1D22AQ8WUA7 517 aa18.56■□□□□ 0.56
CLN3-213ENST00000565047 SIL1Q9H173 461 aa18.56■□□□□ 0.56
CLN3-213ENST00000565047 CRKP46108 304 aa18.55■□□□□ 0.56
CLN3-213ENST00000565047 FRAT1Q92837 279 aaPredicted RBP18.55■□□□□ 0.56
CLN3-213ENST00000565047 RNF186Q9NXI6 227 aa18.55■□□□□ 0.56
CLN3-213ENST00000565047 SAGE1Q9NXZ1 904 aa18.55■□□□□ 0.56
CLN3-213ENST00000565047 ZNF70Q9UC06 446 aaPredicted RBP18.55■□□□□ 0.56
CLN3-213ENST00000565047 FZD1Q9UP38 647 aa18.55■□□□□ 0.56
CLN3-213ENST00000565047 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.55■□□□□ 0.56
CLN3-213ENST00000565047 ZBED9Q6R2W3 1325 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 MYO1BO43795 1136 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 SLC5A1P13866 664 aa18.54■□□□□ 0.56
CLN3-213ENST00000565047 NF2P35240 595 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms