RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GYG1P46976 350 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 MMP14P50281 582 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 BRPF1P55201 1214 aaPredicted RBP13.62□□□□□ -0.23
VPS39-208ENST00000564994 NOGQ13253 232 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 MOB2Q70IA6 237 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 FAM84BQ96KN1 310 aaPredicted RBP13.62□□□□□ -0.23
VPS39-208ENST00000564994 HDAC9Q9UKV0 1011 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 PCDHAC2Q9Y5I4 1007 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 MROH5Q6ZUA9 1318 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 AKAP11Q9UKA4 1901 aa13.61□□□□□ -0.23
VPS39-208ENST00000564994 CAPN15O75808 1086 aa13.61□□□□□ -0.23
VPS39-208ENST00000564994 ZNF157P51786 506 aaPredicted RBP13.61□□□□□ -0.23
VPS39-208ENST00000564994 FKBP1AP62942 108 aaKnown RBP13.61□□□□□ -0.23
VPS39-208ENST00000564994 VGLL2Q8N8G2 317 aa13.61□□□□□ -0.23
VPS39-208ENST00000564994 TDRD7Q8NHU6 1098 aaKnown RBP13.61□□□□□ -0.23
VPS39-208ENST00000564994 BEGAINQ9BUH8 593 aa13.61□□□□□ -0.23
VPS39-208ENST00000564994 FAM205AQ6ZU69 1335 aa13.61□□□□□ -0.23
VPS39-208ENST00000564994 F8W031 263 aaPredicted RBP13.6□□□□□ -0.23
VPS39-208ENST00000564994 SLC10A3P09131 477 aa13.6□□□□□ -0.23
VPS39-208ENST00000564994 HIBADHP31937 336 aaKnown RBP13.6□□□□□ -0.23
VPS39-208ENST00000564994 RFX5P48382 616 aaPredicted RBP13.6□□□□□ -0.23
VPS39-208ENST00000564994 RARSP54136 660 aaKnown RBP13.6□□□□□ -0.23
VPS39-208ENST00000564994 AOX1Q06278 1338 aa13.6□□□□□ -0.23
VPS39-208ENST00000564994 PDE8BO95263 885 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 FKBP1BP68106 108 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 KIF23Q02241 960 aaPredicted RBP13.59□□□□□ -0.23
VPS39-208ENST00000564994 DLGAP5Q15398 846 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 METTL24Q5JXM2 366 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 MIER1Q8N108 512 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 MTMR14Q8NCE2 650 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 CCDC102AQ96A19 550 aa13.59□□□□□ -0.23
VPS39-208ENST00000564994 MYH13Q9UKX3 1938 aa13.58□□□□□ -0.23
VPS39-208ENST00000564994 UBE2Q2LH0YL09 131 aa13.58□□□□□ -0.24
VPS39-208ENST00000564994 PTPN12Q05209 780 aaKnown RBP13.58□□□□□ -0.24
VPS39-208ENST00000564994 CFAP100Q494V2 611 aa13.58□□□□□ -0.24
VPS39-208ENST00000564994 FBXO33Q7Z6M2 555 aa13.58□□□□□ -0.24
VPS39-208ENST00000564994 RASAL3Q86YV0 1011 aa13.58□□□□□ -0.24
VPS39-208ENST00000564994 APOBEC3FQ8IUX4 373 aaKnown RBP13.58□□□□□ -0.24
VPS39-208ENST00000564994 PRMT6Q96LA8 375 aaPredicted RBP13.58□□□□□ -0.24
VPS39-208ENST00000564994 API5Q9BZZ5 524 aaKnown RBP13.58□□□□□ -0.24
VPS39-208ENST00000564994 SPDYE2BA6NHP3 402 aa13.57□□□□□ -0.24
VPS39-208ENST00000564994 CA12O43570 354 aa13.57□□□□□ -0.24
VPS39-208ENST00000564994 UBTFL1P0CB47 393 aaPredicted RBP13.57□□□□□ -0.24
VPS39-208ENST00000564994 SPDYE6P0CI01 402 aa13.57□□□□□ -0.24
VPS39-208ENST00000564994 FGFR2P21802 821 aa13.57□□□□□ -0.24
VPS39-208ENST00000564994 GRIK5Q16478 980 aa13.57□□□□□ -0.24
VPS39-208ENST00000564994 MFSD14BQ5SR56 506 aa13.57□□□□□ -0.24
VPS39-208ENST00000564994 IQSEC3Q9UPP2 1182 aaPredicted RBP13.57□□□□□ -0.24
VPS39-208ENST00000564994 CLRN2A0PK11 232 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 EYA2O00167 538 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 ATG9AQ7Z3C6 839 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 CSRNP1Q96S65 589 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 MEIS3Q99687 375 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 DEFB129Q9H1M3 183 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 FZD1Q9UP38 647 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 SSC5DA1L4H1 1573 aa13.56□□□□□ -0.24
VPS39-208ENST00000564994 COL1A1P02452 1464 aaPredicted RBP13.55□□□□□ -0.24
VPS39-208ENST00000564994 BCAMP50895 628 aa13.55□□□□□ -0.24
VPS39-208ENST00000564994 PRKG1Q13976 671 aa13.55□□□□□ -0.24
VPS39-208ENST00000564994 TTLL12Q14166 644 aaPredicted RBP13.55□□□□□ -0.24
VPS39-208ENST00000564994 DIEXFQ68CQ4 756 aaKnown RBP13.55□□□□□ -0.24
VPS39-208ENST00000564994 ARHGAP45Q92619 1136 aa13.55□□□□□ -0.24
VPS39-208ENST00000564994 TTF2Q9UNY4 1162 aaKnown RBP13.55□□□□□ -0.24
VPS39-208ENST00000564994 TNNQ9UQP3 1299 aa13.55□□□□□ -0.24
VPS39-208ENST00000564994 LRRFIP2Q9Y608 721 aaKnown RBP13.55□□□□□ -0.24
VPS39-208ENST00000564994 BCAR3O75815 825 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 NF2P35240 595 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 RBM5P52756 815 aaKnown RBP eCLIP13.54□□□□□ -0.24
VPS39-208ENST00000564994 CHAF1AQ13111 956 aaPredicted RBP13.54□□□□□ -0.24
VPS39-208ENST00000564994 PUM3Q15397 648 aaKnown RBP13.54□□□□□ -0.24
VPS39-208ENST00000564994 CAVIN4Q5BKX8 364 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 INTS3Q68E01 1043 aaKnown RBP13.54□□□□□ -0.24
VPS39-208ENST00000564994 VPS37DQ86XT2 251 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 RNF186Q9NXI6 227 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 SERPINA10Q9UK55 444 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 KIF16BQ96L93 1317 aa13.54□□□□□ -0.24
VPS39-208ENST00000564994 MYO1BO43795 1136 aa13.53□□□□□ -0.24
VPS39-208ENST00000564994 SIL1Q9H173 461 aa13.53□□□□□ -0.24
VPS39-208ENST00000564994 VEZTQ9HBM0 779 aa13.53□□□□□ -0.24
VPS39-208ENST00000564994 PA2G4Q9UQ80 394 aaKnown RBP13.53□□□□□ -0.24
VPS39-208ENST00000564994 OTOFQ9HC10 1997 aa13.52□□□□□ -0.24
VPS39-208ENST00000564994 TRPA1O75762 1119 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 CIAO1O76071 339 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 IFIT1P09914 478 aaKnown RBP13.52□□□□□ -0.25
VPS39-208ENST00000564994 TRIM27P14373 513 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 CRKP46108 304 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 HNRNPUQ00839 825 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS39-208ENST00000564994 SPDYE2Q495Y8 402 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 LDLRAD1Q5T700 205 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 NBPF12Q5TAG4 269 aaPredicted RBP13.52□□□□□ -0.25
VPS39-208ENST00000564994 ARMC9Q7Z3E5 817 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 LPIN2Q92539 896 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 ABHD8Q96I13 439 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 TDRD3Q9H7E2 651 aaKnown RBP13.52□□□□□ -0.25
VPS39-208ENST00000564994 SAGE1Q9NXZ1 904 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 ZNF70Q9UC06 446 aaPredicted RBP13.52□□□□□ -0.25
VPS39-208ENST00000564994 FBXO3Q9UK99 471 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 ANGEL1Q9UNK9 670 aaKnown RBP13.52□□□□□ -0.25
VPS39-208ENST00000564994 PPP2R3BQ9Y5P8 575 aa13.52□□□□□ -0.25
VPS39-208ENST00000564994 LAMB1P07942 1786 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms