RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 EPS15P42566 896 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 GMPSP49915 693 aaPredicted RBP10.8□□□□□ -0.68
VPS39-207ENST00000563692 MAP1SQ66K74 1059 aaPredicted RBP10.8□□□□□ -0.68
VPS39-207ENST00000563692 KIAA1211Q6ZU35 1233 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 TICAM2Q86XR7 235 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 IL27Q8NEV9 243 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 TBC1D16Q8TBP0 767 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 ZNF594Q96JF6 807 aaPredicted RBP10.8□□□□□ -0.68
VPS39-207ENST00000563692 DBNDD1Q9H9R9 158 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 CNNM1Q9NRU3 951 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 ADARB2Q9NS39 739 aaKnown RBP10.8□□□□□ -0.68
VPS39-207ENST00000563692 DIAPH3Q9NSV4 1193 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 POLLQ9UGP5 575 aa10.8□□□□□ -0.68
VPS39-207ENST00000563692 COL4A5P29400 1685 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 TMEM88BA6NKF7 163 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 LRRC24Q50LG9 513 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 CCDC158Q5M9N0 1113 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 GORABQ5T7V8 394 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 BOLA2Q9H3K6 86 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 GREM2Q9H772 168 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 PODXL2Q9NZ53 605 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 LAMB2P55268 1798 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 XDHP47989 1333 aa10.79□□□□□ -0.68
VPS39-207ENST00000563692 DDX60Q8IY21 1712 aaKnown RBP10.78□□□□□ -0.68
VPS39-207ENST00000563692 ECE2O60344 883 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 ATP2B4P23634 1241 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 TIMM10P62072 90 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 DOK7Q18PE1 504 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 LRRFIP1Q32MZ4 808 aaKnown RBP10.78□□□□□ -0.68
VPS39-207ENST00000563692 METTL24Q5JXM2 366 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 HSCBQ8IWL3 235 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 JMYQ8N9B5 988 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 MPHOSPH8Q99549 860 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 PUS3Q9BZE2 481 aaKnown RBP10.78□□□□□ -0.68
VPS39-207ENST00000563692 BSDC1Q9NW68 430 aaPredicted RBP10.78□□□□□ -0.68
VPS39-207ENST00000563692 DBNLQ9UJU6 430 aaKnown RBP10.78□□□□□ -0.68
VPS39-207ENST00000563692 RIPOR2Q9Y4F9 1068 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 MROH5Q6ZUA9 1318 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 PASKQ96RG2 1323 aa10.78□□□□□ -0.68
VPS39-207ENST00000563692 RTL9Q8NET4 1388 aa10.77□□□□□ -0.68
VPS39-207ENST00000563692 A0A1B0GUL7 405 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 YDJCA8MPS7 323 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 PSMD14O00487 310 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 ITGBL1O95965 494 aaPredicted RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 RPS12P25398 132 aaKnown RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 RABEP1Q15276 862 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 MICALL2Q8IY33 904 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.77□□□□□ -0.69
VPS39-207ENST00000563692 SNX21Q969T3 373 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 HAUS7Q99871 368 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 DBNDD2Q9BQY9 259 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 FSD1Q9BTV5 496 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 ANO2Q9NQ90 1003 aa10.77□□□□□ -0.69
VPS39-207ENST00000563692 TLR7Q9NYK1 1049 aaKnown RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 MKRN1Q9UHC7 482 aaKnown RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 CNOT7Q9UIV1 285 aaKnown RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 ABT1Q9ULW3 272 aaKnown RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.77□□□□□ -0.69
VPS39-207ENST00000563692 SGSM2O43147 1006 aa10.76□□□□□ -0.69
VPS39-207ENST00000563692 KCNJ4P48050 445 aa10.76□□□□□ -0.69
VPS39-207ENST00000563692 TTC39AQ5SRH9 613 aa10.76□□□□□ -0.69
VPS39-207ENST00000563692 CWC27Q6UX04 472 aaKnown RBP10.76□□□□□ -0.69
VPS39-207ENST00000563692 ZC3H15Q8WU90 426 aaKnown RBP10.76□□□□□ -0.69
VPS39-207ENST00000563692 DPF2Q92785 391 aa10.76□□□□□ -0.69
VPS39-207ENST00000563692 GPR101Q96P66 508 aaPredicted RBP10.76□□□□□ -0.69
VPS39-207ENST00000563692 ANKRD2Q9GZV1 360 aa10.76□□□□□ -0.69
VPS39-207ENST00000563692 LRRC37AA6NMS7 1700 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 DUOX1Q9NRD9 1551 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 PDE8BO95263 885 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 IFIT1P09914 478 aaKnown RBP10.75□□□□□ -0.69
VPS39-207ENST00000563692 SLC4A3P48751 1232 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 ANAPC15P60006 121 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 ATP2B3Q16720 1220 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 XAGE2Q96GT9 111 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 TBC1D2Q9BYX2 928 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 MINPP1Q9UNW1 487 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 ZBTB12Q9Y330 459 aaPredicted RBP10.75□□□□□ -0.69
VPS39-207ENST00000563692 CNTNAP1P78357 1384 aa10.75□□□□□ -0.69
VPS39-207ENST00000563692 ST18O60284 1047 aa10.74□□□□□ -0.69
VPS39-207ENST00000563692 PAXIP1Q6ZW49 1069 aaPredicted RBP10.74□□□□□ -0.69
VPS39-207ENST00000563692 PODNQ7Z5L7 613 aa10.74□□□□□ -0.69
VPS39-207ENST00000563692 LPIN2Q92539 896 aa10.74□□□□□ -0.69
VPS39-207ENST00000563692 DNAJC2Q99543 621 aaKnown RBP10.74□□□□□ -0.69
VPS39-207ENST00000563692 LEMD3Q9Y2U8 911 aa10.74□□□□□ -0.69
VPS39-207ENST00000563692 RAD50Q92878 1312 aa10.74□□□□□ -0.69
VPS39-207ENST00000563692 TAF1P21675 1872 aa10.74□□□□□ -0.69
VPS39-207ENST00000563692 USP17L3A6NCW0 530 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 USP17L4A6NCW7 530 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 VIL1P09327 827 aaKnown RBP10.73□□□□□ -0.69
VPS39-207ENST00000563692 UQCRFS1P1P0C7P4 283 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 SLC5A1P13866 664 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 PUM3Q15397 648 aaKnown RBP10.73□□□□□ -0.69
VPS39-207ENST00000563692 DEFB115Q30KQ5 88 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 CDC37L1Q7L3B6 337 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 USP17L1Q7RTZ2 530 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 TRPM4Q8TD43 1214 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 AIDAQ96BJ3 306 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 ZNF512BQ96KM6 892 aaPredicted RBP10.73□□□□□ -0.69
VPS39-207ENST00000563692 KIF2CQ99661 725 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 PAG1Q9NWQ8 432 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms