RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 METAP2P50579 478 aaKnown RBP eCLIP8.78□□□□□ -1
TCF4-216ENST00000562680 CDK5RAP3Q96JB5 506 aa8.78□□□□□ -1
TCF4-216ENST00000562680 TM6SF1Q9BZW5 370 aa8.78□□□□□ -1
TCF4-216ENST00000562680 TTC6Q86TZ1 520 aa8.77□□□□□ -1
TCF4-216ENST00000562680 MAGEB6Q8N7X4 407 aa8.77□□□□□ -1
TCF4-216ENST00000562680 CNKSR1Q969H4 720 aa8.77□□□□□ -1
TCF4-216ENST00000562680 TMX3Q96JJ7 454 aa8.77□□□□□ -1
TCF4-216ENST00000562680 SETQ01105 290 aaPredicted RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 USPL1Q5W0Q7 1092 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 ZNF594Q96JF6 807 aaPredicted RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 ZBTB43O43298 467 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 DSCC1Q9BVC3 393 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 BMP15O95972 392 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 RC3H1Q5TC82 1133 aaKnown RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 KLHDC4Q8TBB5 520 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 OTUD7AQ8TE49 926 aaPredicted RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 EAF2Q96CJ1 260 aaPredicted RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 HAUS7Q99871 368 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 NARFQ9UHQ1 456 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 LEMD3Q9Y2U8 911 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 ADAMTSL3P82987 1691 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 MAP2P11137 1827 aaKnown RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 PDE8BO95263 885 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 CYP19A1P11511 503 aaPredicted RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 NOM1Q5C9Z4 860 aaKnown RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 BRF1Q92994 677 aa8.77□□□□□ -1.01
TCF4-216ENST00000562680 ORC3Q9UBD5 711 aaPredicted RBP8.77□□□□□ -1.01
TCF4-216ENST00000562680 MPHOSPH10O00566 681 aaKnown RBP8.76□□□□□ -1.01
TCF4-216ENST00000562680 STX6O43752 255 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 CCDC192P0DO97 292 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 HAND2P61296 217 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 STK11IPQ8N1F8 1099 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 SPATA5Q8NB90 893 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 ZNF592Q92610 1267 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 TMEM87BQ96K49 555 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 ATP2B1P20020 1258 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 CC2D2BQ6DHV5 1058 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 DPP8Q6V1X1 898 aaPredicted RBP8.76□□□□□ -1.01
TCF4-216ENST00000562680 DDX11Q96FC9 970 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 PYM1Q9BRP8 204 aaKnown RBP8.76□□□□□ -1.01
TCF4-216ENST00000562680 KLF18A0A0U1RQI7 1052 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 IGSF3O75054 1194 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 BBOX1O75936 387 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 NT5C2P49902 561 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 PPP2R5BQ15173 497 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 CAVIN1Q6NZI2 390 aaKnown RBP8.76□□□□□ -1.01
TCF4-216ENST00000562680 ISCA1Q9BUE6 129 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 EHMT1Q9H9B1 1298 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.76□□□□□ -1.01
TCF4-216ENST00000562680 TSPY26PQ9H489 355 aa8.76□□□□□ -1.01
TCF4-216ENST00000562680 PRAMEF22A3QJZ6 481 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 ZNF219Q9P2Y4 722 aaPredicted RBP8.75□□□□□ -1.01
TCF4-216ENST00000562680 IQSEC3Q9UPP2 1182 aaPredicted RBP8.75□□□□□ -1.01
TCF4-216ENST00000562680 PRC1O43663 620 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 MBD4O95243 580 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 RUFY3Q7L099 469 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 CCDC148Q8NFR7 591 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 RAB34Q9BZG1 259 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 SECISBP2LQ93073 1101 aaKnown RBP8.75□□□□□ -1.01
TCF4-216ENST00000562680 COL15A1P39059 1388 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 TRIM37O94972 964 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 GJB2P29033 226 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 RTN1Q16799 776 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 MPNDQ8N594 471 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 FMN2Q9NZ56 1722 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 VGLL3A8MV65 326 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 CTAGE5O15320 804 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 WDHD1O75717 1129 aaPredicted RBP8.75□□□□□ -1.01
TCF4-216ENST00000562680 TSPY3P0CV98 308 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 TSPY8P0CW00 308 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 CCDC96Q2M329 555 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 IFIT1BQ5T764 474 aaKnown RBP8.75□□□□□ -1.01
TCF4-216ENST00000562680 CCAR1Q8IX12 1150 aaKnown RBP8.75□□□□□ -1.01
TCF4-216ENST00000562680 TNMDQ9H2S6 317 aa8.75□□□□□ -1.01
TCF4-216ENST00000562680 XDHP47989 1333 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 GPAA1O43292 621 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 STIM1Q13586 685 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 UBE3CQ15386 1083 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 NUP62CLQ9H1M0 184 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 IGKV5-2P06315 115 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 TNNI2P48788 182 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 GREM2Q9H772 168 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 BMP2KQ9NSY1 1161 aaPredicted RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 ANKRD26Q9UPS8 1709 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 IPO7O95373 1038 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 HSPA4P34932 840 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 MICU3Q86XE3 530 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 RBM28Q9NW13 759 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 CCDC194A0A1B0GVG4 234 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 PCP11498 1178 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 PTPN12Q05209 780 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 Q6ZUG5 572 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 CUL5Q93034 780 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 LLPHQ9BRT6 129 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 GTPBP4Q9BZE4 634 aaKnown RBP8.74□□□□□ -1.01
TCF4-216ENST00000562680 MCM9Q9NXL9 1143 aa8.74□□□□□ -1.01
TCF4-216ENST00000562680 HOOK2Q96ED9 719 aa8.73□□□□□ -1.01
TCF4-216ENST00000562680 CGNQ9P2M7 1197 aaKnown RBP8.73□□□□□ -1.01
TCF4-216ENST00000562680 RFX7Q2KHR2 1363 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms