RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 SASH1O94885 1247 aa12.94□□□□□ -0.34
CLK3-205ENST00000561673 UBE4AQ14139 1066 aa12.94□□□□□ -0.34
CLK3-205ENST00000561673 LRRC24Q50LG9 513 aa12.94□□□□□ -0.34
CLK3-205ENST00000561673 PRAMEF18Q5VWM3 479 aa12.94□□□□□ -0.34
CLK3-205ENST00000561673 HDAC9Q9UKV0 1011 aa12.94□□□□□ -0.34
CLK3-205ENST00000561673 POLR2AP24928 1970 aaKnown RBP12.94□□□□□ -0.34
CLK3-205ENST00000561673 MROH5Q6ZUA9 1318 aa12.93□□□□□ -0.34
CLK3-205ENST00000561673 ZNF157P51786 506 aaPredicted RBP12.93□□□□□ -0.34
CLK3-205ENST00000561673 BRPF1P55201 1214 aaPredicted RBP12.93□□□□□ -0.34
CLK3-205ENST00000561673 NOGQ13253 232 aa12.93□□□□□ -0.34
CLK3-205ENST00000561673 KLHDC4Q8TBB5 520 aa12.93□□□□□ -0.34
CLK3-205ENST00000561673 ZBED3Q96IU2 234 aaPredicted RBP12.93□□□□□ -0.34
CLK3-205ENST00000561673 FAM84BQ96KN1 310 aaPredicted RBP12.93□□□□□ -0.34
CLK3-205ENST00000561673 JAG2Q9Y219 1238 aa12.93□□□□□ -0.34
CLK3-205ENST00000561673 U3KPZ7 1027 aaPredicted RBP12.93□□□□□ -0.34
CLK3-205ENST00000561673 ZNF646O15015 1829 aaPredicted RBP12.92□□□□□ -0.34
CLK3-205ENST00000561673 THSD7BQ9C0I4 1608 aa12.92□□□□□ -0.34
CLK3-205ENST00000561673 F8W031 263 aaPredicted RBP12.92□□□□□ -0.34
CLK3-205ENST00000561673 CAPN15O75808 1086 aa12.92□□□□□ -0.34
CLK3-205ENST00000561673 HIBADHP31937 336 aaKnown RBP12.92□□□□□ -0.34
CLK3-205ENST00000561673 GYG1P46976 350 aa12.92□□□□□ -0.34
CLK3-205ENST00000561673 RARSP54136 660 aaKnown RBP12.92□□□□□ -0.34
CLK3-205ENST00000561673 FKBP1AP62942 108 aaKnown RBP12.92□□□□□ -0.34
CLK3-205ENST00000561673 CCDC102AQ96A19 550 aa12.92□□□□□ -0.34
CLK3-205ENST00000561673 TSKSQ9UJT2 592 aa12.92□□□□□ -0.34
CLK3-205ENST00000561673 FKBP1BP68106 108 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 DLGAP5Q15398 846 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 METTL24Q5JXM2 366 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 MOB2Q70IA6 237 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 MIER1Q8N108 512 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 VGLL2Q8N8G2 317 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 MTMR14Q8NCE2 650 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 TDRD7Q8NHU6 1098 aaKnown RBP12.91□□□□□ -0.34
CLK3-205ENST00000561673 PCDHAC2Q9Y5I4 1007 aa12.91□□□□□ -0.34
CLK3-205ENST00000561673 FAM205AQ6ZU69 1335 aa12.9□□□□□ -0.34
CLK3-205ENST00000561673 UBE2Q2LH0YL09 131 aa12.9□□□□□ -0.34
CLK3-205ENST00000561673 CA12O43570 354 aa12.9□□□□□ -0.34
CLK3-205ENST00000561673 PDE8BO95263 885 aa12.9□□□□□ -0.34
CLK3-205ENST00000561673 RFX5P48382 616 aaPredicted RBP12.9□□□□□ -0.34
CLK3-205ENST00000561673 CFAP100Q494V2 611 aa12.9□□□□□ -0.34
CLK3-205ENST00000561673 FBXO33Q7Z6M2 555 aa12.9□□□□□ -0.34
CLK3-205ENST00000561673 API5Q9BZZ5 524 aaKnown RBP12.9□□□□□ -0.34
CLK3-205ENST00000561673 SLC10A3P09131 477 aa12.89□□□□□ -0.35
CLK3-205ENST00000561673 UBTFL1P0CB47 393 aaPredicted RBP12.89□□□□□ -0.35
CLK3-205ENST00000561673 KIF23Q02241 960 aaPredicted RBP12.89□□□□□ -0.35
CLK3-205ENST00000561673 PTPN12Q05209 780 aaKnown RBP12.89□□□□□ -0.35
CLK3-205ENST00000561673 MFSD14BQ5SR56 506 aa12.89□□□□□ -0.35
CLK3-205ENST00000561673 DIEXFQ68CQ4 756 aaKnown RBP12.89□□□□□ -0.35
CLK3-205ENST00000561673 VPS37DQ86XT2 251 aa12.89□□□□□ -0.35
CLK3-205ENST00000561673 APOBEC3FQ8IUX4 373 aaKnown RBP12.89□□□□□ -0.35
CLK3-205ENST00000561673 PRMT6Q96LA8 375 aaPredicted RBP12.89□□□□□ -0.35
CLK3-205ENST00000561673 A0A1B0GUL6 1792 aa12.89□□□□□ -0.35
CLK3-205ENST00000561673 SPDYE2BA6NHP3 402 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 SPDYE6P0CI01 402 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 TTLL12Q14166 644 aaPredicted RBP12.88□□□□□ -0.35
CLK3-205ENST00000561673 CAVIN4Q5BKX8 364 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 RASAL3Q86YV0 1011 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 ARHGAP45Q92619 1136 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 CSRNP1Q96S65 589 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 DEFB129Q9H1M3 183 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 IQSEC3Q9UPP2 1182 aaPredicted RBP12.88□□□□□ -0.35
CLK3-205ENST00000561673 AOX1Q06278 1338 aa12.88□□□□□ -0.35
CLK3-205ENST00000561673 CLRN2A0PK11 232 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 EYA2O00167 538 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 MYO1BO43795 1136 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 FGFR2P21802 821 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 NF2P35240 595 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 BCAMP50895 628 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 RBM5P52756 815 aaKnown RBP eCLIP12.87□□□□□ -0.35
CLK3-205ENST00000561673 SAMD1Q6SPF0 538 aaPredicted RBP12.87□□□□□ -0.35
CLK3-205ENST00000561673 ATG9AQ7Z3C6 839 aa12.87□□□□□ -0.35
CLK3-205ENST00000561673 TTF2Q9UNY4 1162 aaKnown RBP12.87□□□□□ -0.35
CLK3-205ENST00000561673 FRAT2O75474 233 aaPredicted RBP12.86□□□□□ -0.35
CLK3-205ENST00000561673 BCAR3O75815 825 aa12.86□□□□□ -0.35
CLK3-205ENST00000561673 CHAF1AQ13111 956 aaPredicted RBP12.86□□□□□ -0.35
CLK3-205ENST00000561673 PRKG1Q13976 671 aa12.86□□□□□ -0.35
CLK3-205ENST00000561673 PUM3Q15397 648 aaKnown RBP12.86□□□□□ -0.35
CLK3-205ENST00000561673 GRIK5Q16478 980 aa12.86□□□□□ -0.35
CLK3-205ENST00000561673 INTS3Q68E01 1043 aaKnown RBP12.86□□□□□ -0.35
CLK3-205ENST00000561673 MEIS3Q99687 375 aa12.86□□□□□ -0.35
CLK3-205ENST00000561673 SERPINA10Q9UK55 444 aa12.86□□□□□ -0.35
CLK3-205ENST00000561673 LRRFIP2Q9Y608 721 aaKnown RBP12.86□□□□□ -0.35
CLK3-205ENST00000561673 PAPPA2Q9BXP8 1791 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 TRPA1O75762 1119 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 IFIT1P09914 478 aaKnown RBP12.85□□□□□ -0.35
CLK3-205ENST00000561673 ARMC9Q7Z3E5 817 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 SIL1Q9H173 461 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 VEZTQ9HBM0 779 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 RNF186Q9NXI6 227 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 SAGE1Q9NXZ1 904 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 FZD1Q9UP38 647 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 HDAC5Q9UQL6 1122 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 KIF16BQ96L93 1317 aa12.85□□□□□ -0.35
CLK3-205ENST00000561673 IPO8O15397 1037 aaKnown RBP12.84□□□□□ -0.35
CLK3-205ENST00000561673 CIAO1O76071 339 aa12.84□□□□□ -0.35
CLK3-205ENST00000561673 HNRNPUQ00839 825 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLK3-205ENST00000561673 LDLRAD1Q5T700 205 aa12.84□□□□□ -0.35
CLK3-205ENST00000561673 REM2Q8IYK8 340 aaPredicted RBP12.84□□□□□ -0.35
CLK3-205ENST00000561673 DZIP1LQ8IYY4 767 aaKnown RBP12.84□□□□□ -0.35
CLK3-205ENST00000561673 TBC1D22AQ8WUA7 517 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms