RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	SOX13	Q9UN79	622 aa		6.61	□□□□□ -1.35
SPG11-222	ENST00000560435	PDE2A	O00408	941 aa	Predicted RBP	6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	TIAF1	O95411	115 aa		6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	RPLP1	P05386	114 aa	Known RBP	6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	ACPP	P15309	386 aa		6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	FBXL6	Q8N531	539 aa		6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	SMG8	Q8ND04	991 aa	Known RBP	6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	NUDT16	Q96DE0	195 aa	Known RBP	6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	TMPRSS13	Q9BYE2	586 aa		6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	SUGCT	Q9HAC7	445 aa		6.6	□□□□□ -1.35
SPG11-222	ENST00000560435	CES1	P23141	567 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	RXRB	P28702	533 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	NUTM2G	Q5VZR2	741 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	XKR5	Q6UX68	686 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	NFXL1	Q6ZNB6	911 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	POU5F2	Q8N7G0	328 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	ASIC4	Q96FT7	647 aa		6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	METTL22	Q9BUU2	404 aa	Predicted RBP	6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	6.59	□□□□□ -1.35
SPG11-222	ENST00000560435	ITGB5	P18084	799 aa		6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	HGSNAT	Q68CP4	663 aa		6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	C1orf127	Q8N9H9	656 aa		6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	TMEM102	Q8N9M5	508 aa	Predicted RBP	6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	C12orf50	Q8NA57	414 aa	Predicted RBP	6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	HHIP	Q96QV1	700 aa		6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	CYP4F12	Q9HCS2	524 aa		6.58	□□□□□ -1.36
SPG11-222	ENST00000560435	FAM95C	A0A1B0GW59	222 aa		6.57	□□□□□ -1.36
SPG11-222	ENST00000560435	PRKCSH	P14314	528 aa	Predicted RBP	6.57	□□□□□ -1.36
SPG11-222	ENST00000560435	PAOX	Q6QHF9	649 aa		6.57	□□□□□ -1.36
SPG11-222	ENST00000560435	LOC100289279	A0A1B0GTE1	492 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	TRPA1	O75762	1119 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	C8A	P07357	584 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	JUNB	P17275	347 aa	Predicted RBP	6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	IKBKE	Q14164	716 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	TP53INP2	Q8IXH6	220 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	BSND	Q8WZ55	320 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	CLP1	Q92989	425 aa	Known RBP	6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	PMEPA1	Q969W9	287 aa		6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	SOX17	Q9H6I2	414 aa	Predicted RBP	6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	BSDC1	Q9NW68	430 aa	Predicted RBP	6.56	□□□□□ -1.36
SPG11-222	ENST00000560435	SOX1	O00570	391 aa	Predicted RBP	6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	CYP26A1	O43174	497 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	COL19A1	Q14993	1142 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	NFKBIB	Q15653	356 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	VN1R5	Q7Z5H4	357 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	ATCAY	Q86WG3	371 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	SHISA5	Q8N114	240 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	NXPE3	Q969Y0	559 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	USP26	Q9BXU7	913 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	CHRD	Q9H2X0	955 aa		6.55	□□□□□ -1.36
SPG11-222	ENST00000560435	ATG7	O95352	703 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	PCSK2	P16519	638 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	USP11	P51784	963 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	TMEM164	Q5U3C3	297 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	CDPF1	Q6NVV7	123 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	ZAR1	Q86SH2	424 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	C2CD4A	Q8NCU7	369 aa	Predicted RBP	6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	AGBL5	Q8NDL9	886 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	FBLIM1	Q8WUP2	373 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	EDEM1	Q92611	657 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	EZH1	Q92800	747 aa	Predicted RBP	6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	KRTAP4-9	Q9BYQ8	210 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	PRKAG2	Q9UGJ0	569 aa		6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	ZNF777	Q9ULD5	760 aa	Predicted RBP	6.54	□□□□□ -1.36
SPG11-222	ENST00000560435	DLGAP3	O95886	979 aa		6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	ADM	P35318	185 aa		6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	SRPK2	P78362	688 aa	Known RBP	6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	EXOSC6	Q5RKV6	272 aa	Known RBP	6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	TBC1D32	Q96NH3	1257 aa		6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	OSMR	Q99650	979 aa		6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	ZKSCAN3	Q9BRR0	538 aa		6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	YIPF2	Q9BWQ6	316 aa		6.53	□□□□□ -1.36
SPG11-222	ENST00000560435	DRD2	P14416	443 aa		6.52	□□□□□ -1.37
SPG11-222	ENST00000560435	FLCN	Q8NFG4	579 aa		6.52	□□□□□ -1.37
SPG11-222	ENST00000560435	GGNBP2	Q9H3C7	697 aa		6.52	□□□□□ -1.37
SPG11-222	ENST00000560435	PAK6	Q9NQU5	681 aa	Predicted RBP	6.52	□□□□□ -1.37
SPG11-222	ENST00000560435	EIF4EBP3	O60516	100 aa	Predicted RBP	6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	PDGFA	P04085	211 aa		6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	ESRRA	P11474	423 aa	Predicted RBP	6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	DNM1	Q05193	864 aa	Known RBP	6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	SOX4	Q06945	474 aa	Predicted RBP	6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	GATA6	Q92908	595 aa		6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	BHLHE41	Q9C0J9	482 aa	Predicted RBP	6.51	□□□□□ -1.37
SPG11-222	ENST00000560435	SEPT3	Q9UH03	358 aa		6.51	□□□□□ -1.37
SPG11-222	ENST00000560435		A6NHS1	94 aa		6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	FAM170B	A6NMN3	283 aa		6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	EDN3	P14138	238 aa		6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	MZF1	P28698	734 aa	Predicted RBP	6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	TTC16	Q8NEE8	873 aa		6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	HELQ	Q8TDG4	1101 aa		6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	SLAIN2	Q9P270	581 aa		6.5	□□□□□ -1.37
SPG11-222	ENST00000560435	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	ADH5	P11766	374 aa		6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	ATP2B4	P23634	1241 aa		6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	CYP27A1	Q02318	531 aa		6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	TMEM132A	Q24JP5	1023 aa		6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	C8orf34	Q49A92	452 aa		6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	NOM1	Q5C9Z4	860 aa	Known RBP	6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	NRSN2	Q9GZP1	204 aa		6.49	□□□□□ -1.37
SPG11-222	ENST00000560435	EREG	O14944	169 aa		6.48	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms