RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 EGFRP00533 1210 aa11.6□□□□□ -0.55
LDLR-211ENST00000560173 HIRAP54198 1017 aaPredicted RBP11.6□□□□□ -0.55
LDLR-211ENST00000560173 TFCP2Q12800 502 aa11.6□□□□□ -0.55
LDLR-211ENST00000560173 CREBZFQ9NS37 354 aa11.6□□□□□ -0.55
LDLR-211ENST00000560173 CLEC11AQ9Y240 323 aa11.6□□□□□ -0.55
LDLR-211ENST00000560173 NOP58Q9Y2X3 529 aaKnown RBP11.6□□□□□ -0.55
LDLR-211ENST00000560173 SASH1O94885 1247 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 USP17L8P0C7I0 530 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 BCAMP50895 628 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 G3BP1Q13283 466 aaKnown RBP eCLIP11.59□□□□□ -0.55
LDLR-211ENST00000560173 TBC1D10BQ4KMP7 808 aaPredicted RBP11.59□□□□□ -0.55
LDLR-211ENST00000560173 CAVIN4Q5BKX8 364 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 SAMD7Q7Z3H4 446 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 VPS37DQ86XT2 251 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 CERS5Q8N5B7 392 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 JAG2Q9Y219 1238 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.59□□□□□ -0.55
LDLR-211ENST00000560173 ARAP2Q8WZ64 1704 aa11.59□□□□□ -0.55
LDLR-211ENST00000560173 SURF6O75683 361 aaKnown RBP11.58□□□□□ -0.56
LDLR-211ENST00000560173 ADORA1P30542 326 aa11.58□□□□□ -0.56
LDLR-211ENST00000560173 FKBP1AP62942 108 aaKnown RBP11.58□□□□□ -0.56
LDLR-211ENST00000560173 KIF4BQ2VIQ3 1234 aa11.58□□□□□ -0.56
LDLR-211ENST00000560173 MAP1SQ66K74 1059 aaPredicted RBP11.58□□□□□ -0.56
LDLR-211ENST00000560173 SIRT2Q8IXJ6 389 aa11.58□□□□□ -0.56
LDLR-211ENST00000560173 RPAP2Q8IXW5 612 aaPredicted RBP11.58□□□□□ -0.56
LDLR-211ENST00000560173 ZC3H15Q8WU90 426 aaKnown RBP11.58□□□□□ -0.56
LDLR-211ENST00000560173 PGAP2Q9UHJ9 254 aa11.58□□□□□ -0.56
LDLR-211ENST00000560173 IQSEC3Q9UPP2 1182 aaPredicted RBP11.58□□□□□ -0.56
LDLR-211ENST00000560173 AKAP2Q9Y2D5 859 aa11.58□□□□□ -0.56
LDLR-211ENST00000560173 PASKQ96RG2 1323 aa11.58□□□□□ -0.56
LDLR-211ENST00000560173 COL1A1P02452 1464 aaPredicted RBP11.57□□□□□ -0.56
LDLR-211ENST00000560173 CNTNAP1P78357 1384 aa11.57□□□□□ -0.56
LDLR-211ENST00000560173 A0A1B0GUL7 405 aa11.57□□□□□ -0.56
LDLR-211ENST00000560173 ITGBL1O95965 494 aaPredicted RBP11.57□□□□□ -0.56
LDLR-211ENST00000560173 CTCFP49711 727 aaPredicted RBP11.57□□□□□ -0.56
LDLR-211ENST00000560173 MMP14P50281 582 aa11.57□□□□□ -0.56
LDLR-211ENST00000560173 OS9Q13438 667 aaPredicted RBP11.57□□□□□ -0.56
LDLR-211ENST00000560173 KIAA0825Q8IV33 1275 aa11.57□□□□□ -0.56
LDLR-211ENST00000560173 CNTROBQ8N137 903 aa11.57□□□□□ -0.56
LDLR-211ENST00000560173 MYOZ2Q9NPC6 264 aa11.57□□□□□ -0.56
LDLR-211ENST00000560173 ZBTB22O15209 634 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 HMMRO75330 724 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 PHKA1P46020 1223 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 TIMM10P62072 90 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 CHAF1AQ13111 956 aaPredicted RBP11.56□□□□□ -0.56
LDLR-211ENST00000560173 MFSD14BQ5SR56 506 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 RBM26Q5T8P6 1007 aaKnown RBP11.56□□□□□ -0.56
LDLR-211ENST00000560173 OGFOD1Q8N543 542 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 GPR108Q9NPR9 543 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 EXOC6BQ9Y2D4 811 aa11.56□□□□□ -0.56
LDLR-211ENST00000560173 ASTN2O75129 1339 aaPredicted RBP11.56□□□□□ -0.56
LDLR-211ENST00000560173 FRAT2O75474 233 aaPredicted RBP11.55□□□□□ -0.56
LDLR-211ENST00000560173 TNNI3KQ59H18 835 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 CCDC102BQ68D86 513 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 TBC1D22AQ8WUA7 517 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 AIDAQ96BJ3 306 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 XAGE2Q96GT9 111 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 ABHD8Q96I13 439 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 ZBED3Q96IU2 234 aaPredicted RBP11.55□□□□□ -0.56
LDLR-211ENST00000560173 GNL3LQ9NVN8 582 aaKnown RBP11.55□□□□□ -0.56
LDLR-211ENST00000560173 HDAC9Q9UKV0 1011 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 FPGT-TNNI3KV9GXZ4 949 aa11.55□□□□□ -0.56
LDLR-211ENST00000560173 TNRC18O15417 2968 aaPredicted RBP11.54□□□□□ -0.56
LDLR-211ENST00000560173 F8W031 263 aaPredicted RBP11.54□□□□□ -0.56
LDLR-211ENST00000560173 SEMA3EO15041 775 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 LBX1P52954 281 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 SCARF1Q14162 830 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 GRIK5Q16478 980 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 ERC1Q8IUD2 1116 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 NEUROD6Q96NK8 337 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 CRBNQ96SW2 442 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 GLIS2Q9BZE0 524 aaPredicted RBP11.54□□□□□ -0.56
LDLR-211ENST00000560173 GGA3Q9NZ52 723 aa11.54□□□□□ -0.56
LDLR-211ENST00000560173 TRAF5O00463 557 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 WNT10BO00744 389 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 RASGRF1Q13972 1273 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 NBPF9Q3BBW0 867 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 HSP90AB4PQ58FF6 505 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 CDC37L1Q7L3B6 337 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 MTMR14Q8NCE2 650 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 WDR66Q8TBY9 1149 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 DENND2AQ9ULE3 1009 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 TTF2Q9UNY4 1162 aaKnown RBP11.53□□□□□ -0.56
LDLR-211ENST00000560173 GTF3C3Q9Y5Q9 886 aa11.53□□□□□ -0.56
LDLR-211ENST00000560173 PDS5AQ29RF7 1337 aaKnown RBP11.53□□□□□ -0.56
LDLR-211ENST00000560173 MYH13Q9UKX3 1938 aa11.52□□□□□ -0.56
LDLR-211ENST00000560173 ADM5C9JUS6 153 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 VEGFBP49765 207 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 MLLT1Q03111 559 aaPredicted RBP11.52□□□□□ -0.57
LDLR-211ENST00000560173 FMR1Q06787 632 aaKnown RBP eCLIP11.52□□□□□ -0.57
LDLR-211ENST00000560173 DLGAP5Q15398 846 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 CFAP100Q494V2 611 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 GORABQ5T7V8 394 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 ANGEL2Q5VTE6 544 aaKnown RBP11.52□□□□□ -0.57
LDLR-211ENST00000560173 KRT26Q7Z3Y9 468 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 USP48Q86UV5 1035 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 RHPN1Q8TCX5 695 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 DCPSQ96C86 337 aaKnown RBP11.52□□□□□ -0.57
LDLR-211ENST00000560173 EAF2Q96CJ1 260 aaPredicted RBP11.52□□□□□ -0.57
LDLR-211ENST00000560173 DBNDD2Q9BQY9 259 aa11.52□□□□□ -0.57
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