RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 EIF1AXP47813 144 aaKnown RBP6.54□□□□□ -1.36
LDLR-209ENST00000558528 APLP1P51693 650 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 ENOX2Q16206 610 aaKnown RBP6.54□□□□□ -1.36
LDLR-209ENST00000558528 HSP90AB2PQ58FF8 381 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 ERICH6BQ5W0A0 696 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 CAPN12Q6ZSI9 719 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 CCDC146Q8IYE0 955 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.54□□□□□ -1.36
LDLR-209ENST00000558528 SCG3Q8WXD2 468 aaKnown RBP6.54□□□□□ -1.36
LDLR-209ENST00000558528 PLEKHF1Q96S99 279 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 STIM2Q9P246 746 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 INPP5FQ9Y2H2 1132 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 IL16Q14005 1332 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 TK2O00142 265 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 FZD6O60353 706 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 ZBTB7AO95365 584 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 CT47B1P0C2W7 299 aaPredicted RBP6.53□□□□□ -1.36
LDLR-209ENST00000558528 FBLN1P23142 703 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 PRKAR2BP31323 418 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 DNAJA1P31689 397 aaKnown RBP6.53□□□□□ -1.36
LDLR-209ENST00000558528 RIPK4P57078 832 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 AGERQ15109 404 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 NFE2L2Q16236 605 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 AMOTQ4VCS5 1084 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 SULT6B1Q6IMI4 303 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 TRMT44Q8IYL2 757 aaKnown RBP6.53□□□□□ -1.36
LDLR-209ENST00000558528 JMYQ8N9B5 988 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.53□□□□□ -1.36
LDLR-209ENST00000558528 FAM161BQ96MY7 647 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 PURBQ96QR8 312 aaKnown RBP6.53□□□□□ -1.36
LDLR-209ENST00000558528 BRINP2Q9C0B6 783 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 ACBD3Q9H3P7 528 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 RGPD3A6NKT7 1758 aaPredicted RBP6.53□□□□□ -1.36
LDLR-209ENST00000558528 RGPD4Q7Z3J3 1758 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 MON2Q7Z3U7 1717 aa6.53□□□□□ -1.36
LDLR-209ENST00000558528 SPATA31A5Q5VU36 1347 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 SPATA31A7Q8IWB4 1347 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 IGHA2P01877 340 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 IBSPP21815 317 aaPredicted RBP6.52□□□□□ -1.37
LDLR-209ENST00000558528 SLFN5Q08AF3 891 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 GPR162Q16538 588 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 PLEKHO1Q53GL0 409 aaPredicted RBP6.52□□□□□ -1.37
LDLR-209ENST00000558528 DMRTA1Q5VZB9 504 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 EGFLAMQ63HQ2 1017 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 ANKK1Q8NFD2 765 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 RTF1Q92541 710 aaKnown RBP6.52□□□□□ -1.37
LDLR-209ENST00000558528 C1QTNF2Q9BXJ5 285 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 METTL14Q9HCE5 456 aaKnown RBP6.52□□□□□ -1.37
LDLR-209ENST00000558528 IQSEC3Q9UPP2 1182 aaPredicted RBP6.52□□□□□ -1.37
LDLR-209ENST00000558528 ABCA3Q99758 1704 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 CPDO75976 1380 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 PLEKHG2Q9H7P9 1386 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 AKAP12Q02952 1782 aa6.52□□□□□ -1.37
LDLR-209ENST00000558528 IGSF1Q8N6C5 1336 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 ZNF521Q96K83 1311 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 PNMA6FA0A0J9YX94 578 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 GPR182O15218 404 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 LGR5O75473 907 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 STK10O94804 968 aaKnown RBP6.51□□□□□ -1.37
LDLR-209ENST00000558528 HMOX1P09601 288 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 POTEIP0CG38 1075 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 EVA1CP58658 441 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 GNAI1P63096 354 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 FAM160A2Q8N612 972 aaPredicted RBP6.51□□□□□ -1.37
LDLR-209ENST00000558528 ZCRB1Q8TBF4 217 aaKnown RBP6.51□□□□□ -1.37
LDLR-209ENST00000558528 ANKRD24Q8TF21 1146 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 OSBPL2Q9H1P3 480 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 TMX1Q9H3N1 280 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 ZSWIM4Q9H7M6 989 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 PRDM11Q9NQV5 511 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 BABAM1Q9NWV8 329 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 TSR3Q9UJK0 312 aaKnown RBP6.51□□□□□ -1.37
LDLR-209ENST00000558528 WWC3Q9ULE0 1092 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 SPG7Q9UQ90 795 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 CHMP3Q9Y3E7 222 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 ADCY9O60503 1353 aa6.51□□□□□ -1.37
LDLR-209ENST00000558528 COL3A1P02461 1466 aaPredicted RBP6.5□□□□□ -1.37
LDLR-209ENST00000558528 NBPF6Q5VWK0 638 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 HS2ST1Q7LGA3 356 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 TRMT2AQ8IZ69 625 aaKnown RBP6.5□□□□□ -1.37
LDLR-209ENST00000558528 RAPGEF4Q8WZA2 1011 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 LTV1Q96GA3 475 aaPredicted RBP6.5□□□□□ -1.37
LDLR-209ENST00000558528 NBPF4Q96M43 638 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 MTFR1LQ9H019 292 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 CCDC87Q9NVE4 849 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 DDX41Q9UJV9 622 aaKnown RBP6.5□□□□□ -1.37
LDLR-209ENST00000558528 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.5□□□□□ -1.37
LDLR-209ENST00000558528 AK5Q9Y6K8 562 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 ANKRD26Q9UPS8 1709 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 SLIT3O75094 1523 aa6.5□□□□□ -1.37
LDLR-209ENST00000558528 KDRP35968 1356 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 KIF20BQ96Q89 1820 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 GNAT3A8MTJ3 354 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 TMEM229AB2RXF0 380 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 PPP1R12BO60237 982 aaPredicted RBP6.49□□□□□ -1.37
LDLR-209ENST00000558528 HSP90AB1P08238 724 aaKnown RBP6.49□□□□□ -1.37
LDLR-209ENST00000558528 TATP17735 454 aaPredicted RBP6.49□□□□□ -1.37
LDLR-209ENST00000558528 BRD2P25440 801 aaKnown RBP6.49□□□□□ -1.37
LDLR-209ENST00000558528 HSD3B2P26439 372 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 IGBP1P78318 339 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms