RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 CCDC77Q9BR77 488 aa15.77■□□□□ 0.12
SPG11-210ENST00000558319 ERCC5P28715 1186 aaPredicted RBP15.77■□□□□ 0.12
SPG11-210ENST00000558319 C17orf53Q8N3J3 647 aaPredicted RBP15.77■□□□□ 0.12
SPG11-210ENST00000558319 RFC1P35251 1148 aaPredicted RBP15.77■□□□□ 0.11
SPG11-210ENST00000558319 KRT9P35527 623 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 PPP2R5DQ14738 602 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 SETDB1Q15047 1291 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 TAF12Q16514 161 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 ANKRD13DQ6ZTN6 518 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 TTC14Q96N46 770 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 WASLO00401 505 aaPredicted RBP15.77■□□□□ 0.11
SPG11-210ENST00000558319 EVCP57679 992 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 RASA3Q14644 834 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 KRT24Q2M2I5 525 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 SLC9C2Q5TAH2 1124 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 AFAP1L1Q8TED9 768 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 CASKIN1Q8WXD9 1431 aa15.77■□□□□ 0.11
SPG11-210ENST00000558319 KIF5AQ12840 1032 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 NAA16Q6N069 864 aaPredicted RBP15.76■□□□□ 0.11
SPG11-210ENST00000558319 EP400NLQ6ZTU2 488 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 SNAPC4Q5SXM2 1469 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 A0A1B0GUA9 196 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 SH3BP5O60239 455 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 PPP2R3AQ06190 1150 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 INTS8Q75QN2 995 aaKnown RBP15.76■□□□□ 0.11
SPG11-210ENST00000558319 ACEP12821 1306 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 TTC36A6NLP5 189 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 UBXN1Q04323 297 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 ZSCAN16Q9H4T2 348 aaPredicted RBP15.76■□□□□ 0.11
SPG11-210ENST00000558319 APOBRQ0VD83 1088 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 DCAF17Q5H9S7 520 aaPredicted RBP15.76■□□□□ 0.11
SPG11-210ENST00000558319 PPFIBP2Q8ND30 876 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 CLSTN2Q9H4D0 955 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 UAP1Q16222 522 aaPredicted RBP15.76■□□□□ 0.11
SPG11-210ENST00000558319 RTN1Q16799 776 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 CWF19L2Q2TBE0 894 aaKnown RBP15.76■□□□□ 0.11
SPG11-210ENST00000558319 GPCPD1Q9NPB8 672 aa15.76■□□□□ 0.11
SPG11-210ENST00000558319 NDC80O14777 642 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 ARAP1Q96P48 1450 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 ZBTB43O43298 467 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 RMND1Q9NWS8 449 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 MAGEB6P1A0A0J9YX57 407 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 LMBR1LQ6UX01 489 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 OGFOD1Q8N543 542 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 KSR1Q8IVT5 923 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 CCDC65Q8IXS2 484 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 FERMT1Q9BQL6 677 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 RTL1A6NKG5 1358 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 MRPS27Q92552 414 aaKnown RBP15.75■□□□□ 0.11
SPG11-210ENST00000558319 MCM9Q9NXL9 1143 aa15.75■□□□□ 0.11
SPG11-210ENST00000558319 KRT86O43790 486 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 RIOK3O14730 519 aaKnown RBP15.74■□□□□ 0.11
SPG11-210ENST00000558319 CAVIN2O95810 425 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 DDX12PQ92771 950 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 KRT5P13647 590 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 BMP2KLQ5H9B9 411 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 PLVAPQ9BX97 442 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 FAM13AO94988 1023 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 ALDH1L2Q3SY69 923 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 ERICH3Q5RHP9 1530 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 LRPPRCP42704 1394 aaKnown RBP15.74■□□□□ 0.11
SPG11-210ENST00000558319 CPA1P15085 419 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 INPP5BP32019 993 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 PPP1R7Q15435 360 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 STAC3Q96MF2 364 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 PLEKHA4Q9H4M7 779 aa15.74■□□□□ 0.11
SPG11-210ENST00000558319 DAPK1P53355 1430 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 RAPGEF1Q13905 1077 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 CIB2O75838 187 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 NMIQ13287 307 aaPredicted RBP15.73■□□□□ 0.11
SPG11-210ENST00000558319 ZCRB1Q8TBF4 217 aaKnown RBP15.73■□□□□ 0.11
SPG11-210ENST00000558319 F13A1P00488 732 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 NFATC2IPQ8NCF5 419 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 SDSP20132 328 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 VAV2P52735 878 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 CFAP157Q5JU67 520 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 GBP7Q8N8V2 638 aaPredicted RBP15.73■□□□□ 0.11
SPG11-210ENST00000558319 MAPK8IP1Q9UQF2 711 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 RBM8AQ9Y5S9 174 aaKnown RBP15.73■□□□□ 0.11
SPG11-210ENST00000558319 BACH1O14867 736 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 KRT83P78385 493 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 DIXDC1Q155Q3 683 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 TRIM7Q9C029 511 aa15.73■□□□□ 0.11
SPG11-210ENST00000558319 NDUFAB1O14561 156 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 PSMD6Q15008 389 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 PPP1R21Q6ZMI0 780 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.72■□□□□ 0.11
SPG11-210ENST00000558319 HDAC9Q9UKV0 1011 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 LDHCP07864 332 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 SNRPA1P09661 255 aaKnown RBP15.72■□□□□ 0.11
SPG11-210ENST00000558319 LMNTD2Q8IXW0 634 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 SMC1BQ8NDV3 1235 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 CCDC42Q96M95 316 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 POGZQ7Z3K3 1410 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 ELF2Q15723 593 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 DZIP3Q86Y13 1208 aaKnown RBP15.72■□□□□ 0.11
SPG11-210ENST00000558319 HSPA2P54652 639 aa15.72■□□□□ 0.11
SPG11-210ENST00000558319 CCDC172P0C7W6 258 aa15.71■□□□□ 0.11
SPG11-210ENST00000558319 STXBP4Q6ZWJ1 553 aa15.71■□□□□ 0.11
SPG11-210ENST00000558319 CCDC170Q8IYT3 715 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms