RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 UBE2Q2LH0YL09 131 aa18.42■□□□□ 0.54
SHMT2-235ENST00000557740 FKBP1AP62942 108 aaKnown RBP18.42■□□□□ 0.54
SHMT2-235ENST00000557740 SLFN5Q08AF3 891 aa18.42■□□□□ 0.54
SHMT2-235ENST00000557740 UBE4AQ14139 1066 aa18.42■□□□□ 0.54
SHMT2-235ENST00000557740 REM2Q8IYK8 340 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-235ENST00000557740 KAZALD1Q96I82 304 aa18.42■□□□□ 0.54
SHMT2-235ENST00000557740 JAG2Q9Y219 1238 aa18.42■□□□□ 0.54
SHMT2-235ENST00000557740 COL1A1P02452 1464 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-235ENST00000557740 MYO1BO43795 1136 aa18.41■□□□□ 0.54
SHMT2-235ENST00000557740 TRPA1O75762 1119 aa18.41■□□□□ 0.54
SHMT2-235ENST00000557740 ARMC9Q7Z3E5 817 aa18.41■□□□□ 0.54
SHMT2-235ENST00000557740 CSRNP1Q96S65 589 aa18.41■□□□□ 0.54
SHMT2-235ENST00000557740 PUS3Q9BZE2 481 aaKnown RBP18.41■□□□□ 0.54
SHMT2-235ENST00000557740 RNF186Q9NXI6 227 aa18.41■□□□□ 0.54
SHMT2-235ENST00000557740 MROH5Q6ZUA9 1318 aa18.41■□□□□ 0.54
SHMT2-235ENST00000557740 HIBADHP31937 336 aaKnown RBP18.4■□□□□ 0.54
SHMT2-235ENST00000557740 RABL6Q3YEC7 729 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-235ENST00000557740 CFAP100Q494V2 611 aa18.4■□□□□ 0.54
SHMT2-235ENST00000557740 ANKRD44Q8N8A2 993 aa18.4■□□□□ 0.54
SHMT2-235ENST00000557740 MTMR14Q8NCE2 650 aa18.4■□□□□ 0.54
SHMT2-235ENST00000557740 MCOLN1Q9GZU1 580 aa18.4■□□□□ 0.54
SHMT2-235ENST00000557740 SMC4Q9NTJ3 1288 aa18.4■□□□□ 0.54
SHMT2-235ENST00000557740 SPDYE2BA6NHP3 402 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 CCDC85CA6NKD9 419 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 SPDYE6P0CI01 402 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 GYG1P46976 350 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 RBM5P52756 815 aaKnown RBP eCLIP18.39■□□□□ 0.53
SHMT2-235ENST00000557740 DGKZQ13574 1117 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 PRKG1Q13976 671 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 ALDH1L2Q3SY69 923 aa18.39■□□□□ 0.53
SHMT2-235ENST00000557740 METTL24Q5JXM2 366 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 MFSD14BQ5SR56 506 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 VPS37DQ86XT2 251 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 TDRD7Q8NHU6 1098 aaKnown RBP18.38■□□□□ 0.53
SHMT2-235ENST00000557740 CDCA7LQ96GN5 454 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 DEFB129Q9H1M3 183 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 VEZTQ9HBM0 779 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 RIPOR2Q9Y4F9 1068 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 PPP2R3BQ9Y5P8 575 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 FAM205AQ6ZU69 1335 aa18.38■□□□□ 0.53
SHMT2-235ENST00000557740 CLRN2A0PK11 232 aa18.37■□□□□ 0.53
SHMT2-235ENST00000557740 FAM84BQ96KN1 310 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-235ENST00000557740 PCDHAC2Q9Y5I4 1007 aa18.37■□□□□ 0.53
SHMT2-235ENST00000557740 PTPN12Q05209 780 aaKnown RBP18.36■□□□□ 0.53
SHMT2-235ENST00000557740 LRRC24Q50LG9 513 aa18.36■□□□□ 0.53
SHMT2-235ENST00000557740 USP44Q9H0E7 712 aa18.36■□□□□ 0.53
SHMT2-235ENST00000557740 CASP8AP2Q9UKL3 1982 aa18.36■□□□□ 0.53
SHMT2-235ENST00000557740 ANGEL1Q9UNK9 670 aaKnown RBP18.36■□□□□ 0.53
SHMT2-235ENST00000557740 FRAT2O75474 233 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-235ENST00000557740 CT47B1P0C2W7 299 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-235ENST00000557740 MKRN3Q13064 507 aaKnown RBP18.35■□□□□ 0.53
SHMT2-235ENST00000557740 CAVIN4Q5BKX8 364 aa18.35■□□□□ 0.53
SHMT2-235ENST00000557740 TTF2Q9UNY4 1162 aaKnown RBP18.35■□□□□ 0.53
SHMT2-235ENST00000557740 CCER2I3L3R5 266 aa18.34■□□□□ 0.53
SHMT2-235ENST00000557740 PPP1R12BO60237 982 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-235ENST00000557740 SREBF2Q12772 1141 aa18.34■□□□□ 0.53
SHMT2-235ENST00000557740 KLHDC4Q8TBB5 520 aa18.34■□□□□ 0.53
SHMT2-235ENST00000557740 PRMT6Q96LA8 375 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-235ENST00000557740 SERPINA10Q9UK55 444 aa18.34■□□□□ 0.53
SHMT2-235ENST00000557740 PDE8BO95263 885 aa18.33■□□□□ 0.52
SHMT2-235ENST00000557740 CHAF1AQ13111 956 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-235ENST00000557740 TNFAIP1Q13829 316 aa18.33■□□□□ 0.52
SHMT2-235ENST00000557740 SUPT20HL1Q3ZLR7 823 aa18.33■□□□□ 0.52
SHMT2-235ENST00000557740 LDLRAD1Q5T700 205 aa18.33■□□□□ 0.52
SHMT2-235ENST00000557740 IQSEC3Q9UPP2 1182 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-235ENST00000557740 AOX1Q06278 1338 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 AKAP11Q9UKA4 1901 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 UBTFL1P0CB47 393 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-235ENST00000557740 PUM3Q15397 648 aaKnown RBP18.32■□□□□ 0.52
SHMT2-235ENST00000557740 FBXO33Q7Z6M2 555 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 TRMT2AQ8IZ69 625 aaKnown RBP18.32■□□□□ 0.52
SHMT2-235ENST00000557740 VGLL2Q8N8G2 317 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 TBC1D22AQ8WUA7 517 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-235ENST00000557740 FZD1Q9UP38 647 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 SSC5DA1L4H1 1573 aa18.32■□□□□ 0.52
SHMT2-235ENST00000557740 IFIT1P09914 478 aaKnown RBP18.31■□□□□ 0.52
SHMT2-235ENST00000557740 RASA3Q14644 834 aa18.31■□□□□ 0.52
SHMT2-235ENST00000557740 MAP3K11Q16584 847 aa18.31■□□□□ 0.52
SHMT2-235ENST00000557740 SPDYE2Q495Y8 402 aa18.31■□□□□ 0.52
SHMT2-235ENST00000557740 SPRYD7Q5W111 196 aa18.31■□□□□ 0.52
SHMT2-235ENST00000557740 SLC10A4Q96EP9 437 aa18.31■□□□□ 0.52
SHMT2-235ENST00000557740 API5Q9BZZ5 524 aaKnown RBP18.31■□□□□ 0.52
SHMT2-235ENST00000557740 ZNF70Q9UC06 446 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-235ENST00000557740 EYA2O00167 538 aa18.3■□□□□ 0.52
SHMT2-235ENST00000557740 CRKP46108 304 aa18.3■□□□□ 0.52
SHMT2-235ENST00000557740 IREB2P48200 963 aaKnown RBP18.3■□□□□ 0.52
SHMT2-235ENST00000557740 TM4SF4P48230 202 aa18.3■□□□□ 0.52
SHMT2-235ENST00000557740 CTU1Q7Z7A3 348 aaKnown RBP18.3■□□□□ 0.52
SHMT2-235ENST00000557740 DZIP1LQ8IYY4 767 aaKnown RBP18.3■□□□□ 0.52
SHMT2-235ENST00000557740 NOB1Q9ULX3 412 aaKnown RBP18.3■□□□□ 0.52
SHMT2-235ENST00000557740 ECM29Q5VYK3 1845 aa18.3■□□□□ 0.52
SHMT2-235ENST00000557740 ARAP2Q8WZ64 1704 aa18.29■□□□□ 0.52
SHMT2-235ENST00000557740 KIF16BQ96L93 1317 aa18.29■□□□□ 0.52
SHMT2-235ENST00000557740 TBC1D8O95759 1140 aa18.29■□□□□ 0.52
SHMT2-235ENST00000557740 SLC5A1P13866 664 aa18.29■□□□□ 0.52
SHMT2-235ENST00000557740 BCAMP50895 628 aa18.29■□□□□ 0.52
SHMT2-235ENST00000557740 NBPF12Q5TAG4 269 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-235ENST00000557740 TDRD3Q9H7E2 651 aaKnown RBP18.29■□□□□ 0.52
SHMT2-235ENST00000557740 UNCXA6NJT0 531 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms