RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 LRP10Q7Z4F1 713 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 FBXL16Q8N461 479 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 NFATC2IPQ8NCF5 419 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 C8orf76Q96K31 380 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 GPR108Q9NPR9 543 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 ATP5J2-PTCD1G3V325 749 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 SPTLC2O15270 562 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 RNF113AO15541 343 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 PTCD1O75127 700 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 EVCP57679 992 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 RAPGEF4Q8WZA2 1011 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 AXIN2Q9Y2T1 843 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 CLIC4Q9Y696 253 aa13.73□□□□□ -0.21
VIPAS39-211ENST00000557658 MAST3O60307 1309 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 KDM6AO15550 1401 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 CCP110O43303 1012 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 DHX16O60231 1041 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 FAM193AP78312 1265 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 LMOD2Q6P5Q4 547 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 SYT10Q6XYQ8 523 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 BRAPQ7Z569 592 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 TTC5Q8N0Z6 440 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 A0A0G2JLW4 131 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 CASP7P55210 303 aa13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 BMS1Q14692 1282 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 RBM33Q96EV2 1170 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-211ENST00000557658 ZNF202O95125 648 aa13.71□□□□□ -0.21
VIPAS39-211ENST00000557658 POLR3DP05423 398 aaPredicted RBP13.71□□□□□ -0.21
VIPAS39-211ENST00000557658 H2AFXP16104 143 aaPredicted RBP13.71□□□□□ -0.21
VIPAS39-211ENST00000557658 CCDC93Q567U6 631 aa13.71□□□□□ -0.21
VIPAS39-211ENST00000557658 MYSM1Q5VVJ2 828 aa13.71□□□□□ -0.21
VIPAS39-211ENST00000557658 SYNE3Q6ZMZ3 975 aa13.71□□□□□ -0.21
VIPAS39-211ENST00000557658 NEDD4P46934 1319 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 CCDC66A2RUB6 948 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 BIN1O00499 593 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 NPHP1O15259 732 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 IFIT1P09914 478 aaKnown RBP13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 IL15P40933 162 aaPredicted RBP13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 PIP4K2AP48426 406 aaPredicted RBP13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 ERCC6LQ2NKX8 1250 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 OTUD7BQ6GQQ9 843 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 ATG9AQ7Z3C6 839 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 FBXO18Q8NFZ0 1043 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 FMNL2Q96PY5 1086 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 SPEF2Q9C093 1822 aa13.71□□□□□ -0.22
VIPAS39-211ENST00000557658 RGPD5Q99666 1765 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 IKBKBO14920 756 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 PHKG2P15735 406 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 TIMM10P62072 90 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 CREBRFQ8IUR6 639 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 PLBD2Q8NHP8 589 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 ORC3Q9UBD5 711 aaPredicted RBP13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 FOXO4P98177 505 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 NCAPHQ15003 741 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 HOMER1Q86YM7 354 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 ZNF446Q9NWS9 450 aa13.7□□□□□ -0.22
VIPAS39-211ENST00000557658 TATP17735 454 aaPredicted RBP13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 CMA1P23946 247 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 FANCCQ00597 558 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 LRRFIP1Q32MZ4 808 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 ANO1Q5XXA6 986 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 TTLL5Q6EMB2 1281 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 PHLPP2Q6ZVD8 1323 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 KLF18A0A0U1RQI7 1052 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 M0R2C6 588 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 CPLX1O14810 134 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 PFKFB1P16118 471 aa13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 ETF1P62495 437 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 IMMTQ16891 758 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-211ENST00000557658 GOLGA8BA8MQT2 603 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 H7C1W4 665 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 CBFA2T2O43439 604 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 LMOD1P29536 600 aaPredicted RBP13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 IFNL2Q8IZJ0 200 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 TIGD1Q96MW7 591 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 GPHNQ9NQX3 736 aaPredicted RBP13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 PRC1O43663 620 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 AXDND1Q5T1B0 1012 aaPredicted RBP13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 SYTL4Q96C24 671 aaPredicted RBP13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 ORAI2Q96SN7 254 aa13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 ARGLU1Q9NWB6 273 aaPredicted RBP13.68□□□□□ -0.22
VIPAS39-211ENST00000557658 KIF1AQ12756 1690 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 EYA2O00167 538 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 CLCN6P51797 869 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 ARHGAP29Q52LW3 1261 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 NLRP2Q9NX02 1062 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.67□□□□□ -0.222e-6■■■■□ 24.3
VIPAS39-211ENST00000557658 KIF23Q02241 960 aaPredicted RBP13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 RGS22Q8NE09 1264 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 UBXN4Q92575 508 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 OSBP2Q969R2 916 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 SRRTQ9BXP5 876 aaKnown RBP13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 DNAI1Q9UI46 699 aa13.67□□□□□ -0.22
VIPAS39-211ENST00000557658 TMEM94Q12767 1356 aa13.66□□□□□ -0.22
VIPAS39-211ENST00000557658 A0A1B0GUL7 405 aa13.66□□□□□ -0.22
VIPAS39-211ENST00000557658 UBASH3AP57075 661 aa13.66□□□□□ -0.22
VIPAS39-211ENST00000557658 HAND2P61296 217 aa13.66□□□□□ -0.22
VIPAS39-211ENST00000557658 SLC39A14Q15043 492 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms