RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	SFPQ	P23246	707 aa	Known RBP eCLIP	18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	NLRP12	P59046	1061 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	TIGD1	Q96MW7	591 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	LMBR1L	Q6UX01	489 aa		18.91	■□□□□ 0.62
SHMT2-231	ENST00000557433	NFATC2IP	Q8NCF5	419 aa		18.91	■□□□□ 0.62
SHMT2-231	ENST00000557433	C8orf76	Q96K31	380 aa		18.91	■□□□□ 0.62
SHMT2-231	ENST00000557433	AXIN2	Q9Y2T1	843 aa		18.91	■□□□□ 0.62
SHMT2-231	ENST00000557433	LAMB4	A4D0S4	1761 aa		18.91	■□□□□ 0.62
SHMT2-231	ENST00000557433	MAST3	O60307	1309 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	SPTLC2	O15270	562 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	SLC3A2	P08195	630 aa	Known RBP	18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	FOXO4	P98177	505 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	KMT5B	Q4FZB7	885 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	ATG9A	Q7Z3C6	839 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	FDPS	P14324	419 aa	Known RBP	18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	CMA1	P23946	247 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	NDUFA8	P51970	172 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	FBXO18	Q8NFZ0	1043 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	NDUFB9	Q9Y6M9	179 aa		18.9	■□□□□ 0.62
SHMT2-231	ENST00000557433	ABCC12	Q96J65	1359 aa		18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	CBFA2T2	O43439	604 aa		18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	IFIT1	P09914	478 aa	Known RBP	18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	IMMT	Q16891	758 aa	Known RBP	18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	ZNF771	Q7L3S4	317 aa	Predicted RBP	18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	NEUROD6	Q96NK8	337 aa		18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	NCOA5	Q9HCD5	579 aa	Known RBP	18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	FBXO3	Q9UK99	471 aa		18.89	■□□□□ 0.61
SHMT2-231	ENST00000557433	MYSM1	Q5VVJ2	828 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	E4F1	Q66K89	784 aa	Predicted RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	SYNE3	Q6ZMZ3	975 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	PPP1R13B	Q96KQ4	1090 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	SRRT	Q9BXP5	876 aa	Known RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	TRMT1	Q9NXH9	659 aa	Known RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	NAP1L2	Q9ULW6	460 aa	Predicted RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433		A0A1B0GVL5	298 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	EYA2	O00167	538 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	SMC2	O95347	1197 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	FOSB	P53539	338 aa		18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	NAA30	Q147X3	362 aa	Predicted RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	XPO4	Q9C0E2	1151 aa	Known RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	CWC25	Q9NXE8	425 aa	Predicted RBP	18.88	■□□□□ 0.61
SHMT2-231	ENST00000557433	ZNF142	P52746	1687 aa	Predicted RBP	18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	CHGB	P05060	677 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	SLFN14	P0C7P3	912 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	BMS1	Q14692	1282 aa	Known RBP	18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	DPCR1	Q3MIW9	517 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	CCDC93	Q567U6	631 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	TMC6	Q7Z403	805 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	FCHSD1	Q86WN1	690 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	IFNK	Q9P0W0	207 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	NEDD4	P46934	1319 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	PHLPP2	Q6ZVD8	1323 aa		18.87	■□□□□ 0.61
SHMT2-231	ENST00000557433	ZNF202	O95125	648 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	GUCY1B3	Q02153	619 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	TERF2	Q15554	542 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	ELF2	Q15723	593 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	FBXO38	Q6PIJ6	1188 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	JMY	Q8N9B5	988 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	H2AFX	P16104	143 aa	Predicted RBP	18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	ANO1	Q5XXA6	986 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	ARMCX5	Q6P1M9	558 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	KRT28	Q7Z3Y7	464 aa		18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	ORC3	Q9UBD5	711 aa	Predicted RBP	18.86	■□□□□ 0.61
SHMT2-231	ENST00000557433	ATP5J2-PTCD1	G3V325	749 aa		18.85	■□□□□ 0.61
SHMT2-231	ENST00000557433	PTCD1	O75127	700 aa	Known RBP	18.85	■□□□□ 0.61
SHMT2-231	ENST00000557433	TPM1	P09493	284 aa		18.85	■□□□□ 0.61
SHMT2-231	ENST00000557433	ORAI2	Q96SN7	254 aa		18.85	■□□□□ 0.61
SHMT2-231	ENST00000557433	AKAP2	Q9Y2D5	859 aa		18.85	■□□□□ 0.61
SHMT2-231	ENST00000557433	CLIC4	Q9Y696	253 aa		18.85	■□□□□ 0.61
SHMT2-231	ENST00000557433	FAM237A	A0A1B0GTK4	181 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	CCDC66	A2RUB6	948 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	CPLX1	O14810	134 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	NCAPH	Q15003	741 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	MB21D2	Q8IYB1	491 aa	Predicted RBP	18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	CCDC191	Q8NCU4	936 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	NCOA7	Q8NI08	942 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	NLRP2	Q9NX02	1062 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	TUBE1	Q9UJT0	475 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	PARP4	Q9UKK3	1724 aa	Known RBP	18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	RGPD5	Q99666	1765 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	PKD1L3	Q7Z443	1732 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	PPP6R2	O75170	966 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	SLC39A14	Q15043	492 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	CCDC158	Q5M9N0	1113 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	AXDND1	Q5T1B0	1012 aa	Predicted RBP	18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	LMOD2	Q6P5Q4	547 aa		18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	ELOA2	Q8IYF1	753 aa	Predicted RBP	18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
SHMT2-231	ENST00000557433	MEGF6	O75095	1541 aa		18.83	■□□□□ 0.61
SHMT2-231	ENST00000557433		A0A1B0GUL7	405 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	GOLGA8B	A8MQT2	603 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433		M0R2C6	588 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	PRC1	O43663	620 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	CDKL5	O76039	1030 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	TIMM10	P62072	90 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	ETF1	P62495	437 aa	Known RBP	18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	FANCC	Q00597	558 aa		18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	KIF23	Q02241	960 aa	Predicted RBP	18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	ARGLU1	Q9NWB6	273 aa	Predicted RBP	18.83	■□□□□ 0.6
SHMT2-231	ENST00000557433	ALS2	Q96Q42	1657 aa		18.83	■□□□□ 0.6

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