RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 IQSEC3Q9UPP2 1182 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-228ENST00000557302 JAG2Q9Y219 1238 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 CLEC11AQ9Y240 323 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 EXOC6BQ9Y2D4 811 aa16.77■□□□□ 0.28
SHMT2-228ENST00000557302 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-228ENST00000557302 FAM205AQ6ZU69 1335 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 HSPA6P17066 643 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 ADORA1P30542 326 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 FKBP1AP62942 108 aaKnown RBP16.76■□□□□ 0.27
SHMT2-228ENST00000557302 FSTL1Q12841 308 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 CHADLQ6NUI6 762 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 ERC1Q8IUD2 1116 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 GPR108Q9NPR9 543 aa16.76■□□□□ 0.27
SHMT2-228ENST00000557302 ZNF280AP59817 542 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-228ENST00000557302 CHAF1AQ13111 956 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-228ENST00000557302 SAMD7Q7Z3H4 446 aa16.75■□□□□ 0.27
SHMT2-228ENST00000557302 OGFOD1Q8N543 542 aa16.75■□□□□ 0.27
SHMT2-228ENST00000557302 TRPM4Q8TD43 1214 aa16.75■□□□□ 0.27
SHMT2-228ENST00000557302 XAGE2Q96GT9 111 aa16.75■□□□□ 0.27
SHMT2-228ENST00000557302 PHKA1P46020 1223 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 MMP14P50281 582 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 TBC1D10BQ4KMP7 808 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-228ENST00000557302 TNNI3KQ59H18 835 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 MFSD14BQ5SR56 506 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 GORABQ5T7V8 394 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 RBM26Q5T8P6 1007 aaKnown RBP16.74■□□□□ 0.27
SHMT2-228ENST00000557302 KIAA0825Q8IV33 1275 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 CERS5Q8N5B7 392 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 HDAC9Q9UKV0 1011 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 FPGT-TNNI3KV9GXZ4 949 aa16.74■□□□□ 0.27
SHMT2-228ENST00000557302 KIF4BQ2VIQ3 1234 aa16.73■□□□□ 0.27
SHMT2-228ENST00000557302 CCDC102BQ68D86 513 aa16.73■□□□□ 0.27
SHMT2-228ENST00000557302 TBC1D22AQ8WUA7 517 aa16.73■□□□□ 0.27
SHMT2-228ENST00000557302 ZNF646O15015 1829 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-228ENST00000557302 SEMA3EO15041 775 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 RAB11FIP3O75154 756 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 EGFRP00533 1210 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 HIRAP54198 1017 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-228ENST00000557302 AAMPQ13685 434 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 ZC3H15Q8WU90 426 aaKnown RBP16.72■□□□□ 0.27
SHMT2-228ENST00000557302 KIF1BPQ96EK5 621 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 MYOZ2Q9NPC6 264 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 DENND2AQ9ULE3 1009 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 PCDHB15Q9Y5E8 787 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 ARAP2Q8WZ64 1704 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 ADAMTSL1Q8N6G6 1762 aa16.72■□□□□ 0.27
SHMT2-228ENST00000557302 F8W031 263 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-228ENST00000557302 APBB1O00213 710 aa16.71■□□□□ 0.27
SHMT2-228ENST00000557302 ZBTB22O15209 634 aa16.71■□□□□ 0.27
SHMT2-228ENST00000557302 MAP1SQ66K74 1059 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-228ENST00000557302 WDR66Q8TBY9 1149 aa16.71■□□□□ 0.27
SHMT2-228ENST00000557302 RHPN1Q8TCX5 695 aa16.71■□□□□ 0.27
SHMT2-228ENST00000557302 COL1A1P02452 1464 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-228ENST00000557302 EAF2Q96CJ1 260 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-228ENST00000557302 DBNDD2Q9BQY9 259 aa16.7■□□□□ 0.26
SHMT2-228ENST00000557302 IL1RAPL2Q9NP60 686 aa16.7■□□□□ 0.26
SHMT2-228ENST00000557302 PGAP2Q9UHJ9 254 aa16.7■□□□□ 0.26
SHMT2-228ENST00000557302 RASGRF1Q13972 1273 aa16.69■□□□□ 0.26
SHMT2-228ENST00000557302 CCDC158Q5M9N0 1113 aa16.69■□□□□ 0.26
SHMT2-228ENST00000557302 AACSQ86V21 672 aa16.69■□□□□ 0.26
SHMT2-228ENST00000557302 CNTROBQ8N137 903 aa16.69■□□□□ 0.26
SHMT2-228ENST00000557302 CLASRPQ8N2M8 674 aaKnown RBP16.69■□□□□ 0.26
SHMT2-228ENST00000557302 EXOC6Q8TAG9 804 aa16.69■□□□□ 0.26
SHMT2-228ENST00000557302 CCDC8Q9H0W5 538 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-228ENST00000557302 DBNLQ9UJU6 430 aaKnown RBP16.69■□□□□ 0.26
SHMT2-228ENST00000557302 TTF2Q9UNY4 1162 aaKnown RBP16.69■□□□□ 0.26
SHMT2-228ENST00000557302 PDS5AQ29RF7 1337 aaKnown RBP16.69■□□□□ 0.26
SHMT2-228ENST00000557302 UQCRFS1P1P0C7P4 283 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 ARID4AP29374 1257 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-228ENST00000557302 SCARF1Q14162 830 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 DLGAP5Q15398 846 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 TTC39AQ5SRH9 613 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 DCTPP1Q9H773 170 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 TLR7Q9NYK1 1049 aaKnown RBP16.68■□□□□ 0.26
SHMT2-228ENST00000557302 SUGT1Q9Y2Z0 365 aa16.68■□□□□ 0.26
SHMT2-228ENST00000557302 ITGBL1O95965 494 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-228ENST00000557302 DCPSQ96C86 337 aaKnown RBP16.67■□□□□ 0.26
SHMT2-228ENST00000557302 LRRCC1Q9C099 1032 aa16.67■□□□□ 0.26
SHMT2-228ENST00000557302 GGA3Q9NZ52 723 aa16.67■□□□□ 0.26
SHMT2-228ENST00000557302 PCNTO95613 3336 aa16.67■□□□□ 0.26
SHMT2-228ENST00000557302 SALL1Q9NSC2 1324 aa16.67■□□□□ 0.26
SHMT2-228ENST00000557302 WNT10BO00744 389 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 APLP1P51693 650 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 RBM5P52756 815 aaKnown RBP eCLIP16.66■□□□□ 0.26
SHMT2-228ENST00000557302 GRIK5Q16478 980 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 NBPF9Q3BBW0 867 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 CFAP100Q494V2 611 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 ZGPATQ8N5A5 531 aaKnown RBP16.66■□□□□ 0.26
SHMT2-228ENST00000557302 SPATA5Q8NB90 893 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 MTMR14Q8NCE2 650 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 ZBED3Q96IU2 234 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-228ENST00000557302 BCL11AQ9H165 835 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 HMG20BQ9P0W2 317 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 SERPINA10Q9UK55 444 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 MAST3O60307 1309 aa16.66■□□□□ 0.26
SHMT2-228ENST00000557302 ASTN2O75129 1339 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-228ENST00000557302 IFIT2P09913 472 aaKnown RBP16.65■□□□□ 0.26
SHMT2-228ENST00000557302 MCAMP43121 646 aa16.65■□□□□ 0.26
SHMT2-228ENST00000557302 IRX6P78412 446 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms