RNA–Protein interactions for RNA: ENST00000556975.5

TMEM260-214, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-214ENST00000556975 FAM205AQ6ZU69 1335 aa28.43■■■□□ 2.14
TMEM260-214ENST00000556975 HIBADHP31937 336 aaKnown RBP28.42■■■□□ 2.14
TMEM260-214ENST00000556975 RGMBQ6NW40 437 aa28.42■■■□□ 2.14
TMEM260-214ENST00000556975 VGLL2Q8N8G2 317 aa28.42■■■□□ 2.14
TMEM260-214ENST00000556975 MTMR14Q8NCE2 650 aa28.42■■■□□ 2.14
TMEM260-214ENST00000556975 KIF16BQ96L93 1317 aa28.42■■■□□ 2.14
TMEM260-214ENST00000556975 PDE8BO95263 885 aa28.41■■■□□ 2.14
TMEM260-214ENST00000556975 RFX5P48382 616 aaPredicted RBP28.41■■■□□ 2.14
TMEM260-214ENST00000556975 UBTFL1P0CB47 393 aaPredicted RBP28.4■■■□□ 2.14
TMEM260-214ENST00000556975 GYG1P46976 350 aa28.4■■■□□ 2.14
TMEM260-214ENST00000556975 FKBP1BP68106 108 aa28.4■■■□□ 2.14
TMEM260-214ENST00000556975 NOGQ13253 232 aa28.4■■■□□ 2.14
TMEM260-214ENST00000556975 METTL24Q5JXM2 366 aa28.4■■■□□ 2.14
TMEM260-214ENST00000556975 KLHDC4Q8TBB5 520 aa28.4■■■□□ 2.14
TMEM260-214ENST00000556975 HDAC5Q9UQL6 1122 aa28.4■■■□□ 2.14
TMEM260-214ENST00000556975 FBXO33Q7Z6M2 555 aa28.39■■■□□ 2.14
TMEM260-214ENST00000556975 BEGAINQ9BUH8 593 aa28.39■■■□□ 2.14
TMEM260-214ENST00000556975 HSPA8P11142 646 aaKnown RBP28.38■■■□□ 2.13
TMEM260-214ENST00000556975 PTPN12Q05209 780 aaKnown RBP28.38■■■□□ 2.13
TMEM260-214ENST00000556975 DLGAP5Q15398 846 aa28.38■■■□□ 2.13
TMEM260-214ENST00000556975 CCDC102AQ96A19 550 aa28.38■■■□□ 2.13
TMEM260-214ENST00000556975 FAM155AB1AL88 458 aaPredicted RBP28.37■■■□□ 2.13
TMEM260-214ENST00000556975 INTS3Q68E01 1043 aaKnown RBP28.37■■■□□ 2.13
TMEM260-214ENST00000556975 SCAF8Q9UPN6 1271 aaKnown RBP28.37■■■□□ 2.13
TMEM260-214ENST00000556975 EYA2O00167 538 aa28.36■■■□□ 2.13
TMEM260-214ENST00000556975 APOBEC3FQ8IUX4 373 aaKnown RBP28.36■■■□□ 2.13
TMEM260-214ENST00000556975 FBXO3Q9UK99 471 aa28.36■■■□□ 2.13
TMEM260-214ENST00000556975 ZNF157P51786 506 aaPredicted RBP28.35■■■□□ 2.13
TMEM260-214ENST00000556975 JAG2Q9Y219 1238 aa28.35■■■□□ 2.13
TMEM260-214ENST00000556975 IPO8O15397 1037 aaKnown RBP28.34■■■□□ 2.13
TMEM260-214ENST00000556975 CA12O43570 354 aa28.34■■■□□ 2.13
TMEM260-214ENST00000556975 FGFR2P21802 821 aa28.34■■■□□ 2.13
TMEM260-214ENST00000556975 HNRNPUQ00839 825 aaKnown RBP eCLIP28.34■■■□□ 2.13
TMEM260-214ENST00000556975 CAVIN4Q5BKX8 364 aa28.34■■■□□ 2.13
TMEM260-214ENST00000556975 PAPPA2Q9BXP8 1791 aa28.34■■■□□ 2.13
TMEM260-214ENST00000556975 F8W031 263 aaPredicted RBP28.33■■■□□ 2.13
TMEM260-214ENST00000556975 CFAP100Q494V2 611 aa28.33■■■□□ 2.13
TMEM260-214ENST00000556975 MFSD14BQ5SR56 506 aa28.33■■■□□ 2.13
TMEM260-214ENST00000556975 PRAMEF18Q5VWM3 479 aa28.33■■■□□ 2.13
TMEM260-214ENST00000556975 VPS37DQ86XT2 251 aa28.33■■■□□ 2.13
TMEM260-214ENST00000556975 ZIC5Q96T25 663 aa28.33■■■□□ 2.13
TMEM260-214ENST00000556975 PUM3Q15397 648 aaKnown RBP28.32■■■□□ 2.12
TMEM260-214ENST00000556975 ATG9AQ7Z3C6 839 aa28.32■■■□□ 2.12
TMEM260-214ENST00000556975 MEIS3Q99687 375 aa28.32■■■□□ 2.12
TMEM260-214ENST00000556975 LRRFIP2Q9Y608 721 aaKnown RBP28.32■■■□□ 2.12
TMEM260-214ENST00000556975 SPDYE2BA6NHP3 402 aa28.31■■■□□ 2.12
TMEM260-214ENST00000556975 BCAR3O75815 825 aa28.31■■■□□ 2.12
TMEM260-214ENST00000556975 CIAO1O76071 339 aa28.31■■■□□ 2.12
TMEM260-214ENST00000556975 SLC10A3P09131 477 aa28.31■■■□□ 2.12
TMEM260-214ENST00000556975 SPDYE6P0CI01 402 aa28.31■■■□□ 2.12
TMEM260-214ENST00000556975 PRMT6Q96LA8 375 aaPredicted RBP28.31■■■□□ 2.12
TMEM260-214ENST00000556975 PCDHAC2Q9Y5I4 1007 aa28.31■■■□□ 2.12
TMEM260-214ENST00000556975 COL1A1P02452 1464 aaPredicted RBP28.3■■■□□ 2.12
TMEM260-214ENST00000556975 IFIT1P09914 478 aaKnown RBP28.3■■■□□ 2.12
TMEM260-214ENST00000556975 NF2P35240 595 aa28.3■■■□□ 2.12
TMEM260-214ENST00000556975 ATF7IPQ6VMQ6 1270 aa28.3■■■□□ 2.12
TMEM260-214ENST00000556975 ECM29Q5VYK3 1845 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 MYO1BO43795 1136 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 GNAI3P08754 354 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 TRIM27P14373 513 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 LPIN2Q92539 896 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 DEFB129Q9H1M3 183 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 SERPINA10Q9UK55 444 aa28.29■■■□□ 2.12
TMEM260-214ENST00000556975 BCAMP50895 628 aa28.28■■■□□ 2.12
TMEM260-214ENST00000556975 KIF23Q02241 960 aaPredicted RBP28.28■■■□□ 2.12
TMEM260-214ENST00000556975 MOB2Q70IA6 237 aa28.28■■■□□ 2.12
TMEM260-214ENST00000556975 TBC1D22AQ8WUA7 517 aa28.28■■■□□ 2.12
TMEM260-214ENST00000556975 TTF2Q9UNY4 1162 aaKnown RBP28.28■■■□□ 2.12
TMEM260-214ENST00000556975 PPP2R3BQ9Y5P8 575 aa28.28■■■□□ 2.12
TMEM260-214ENST00000556975 COPRSQ9NQ92 184 aa28.27■■■□□ 2.12
TMEM260-214ENST00000556975 IQSEC3Q9UPP2 1182 aaPredicted RBP28.27■■■□□ 2.12
TMEM260-214ENST00000556975 UBE2Q2LH0YL09 131 aa28.26■■■□□ 2.11
TMEM260-214ENST00000556975 FRAT2O75474 233 aaPredicted RBP28.26■■■□□ 2.11
TMEM260-214ENST00000556975 SLC5A1P13866 664 aa28.26■■■□□ 2.11
TMEM260-214ENST00000556975 RASAL3Q86YV0 1011 aa28.26■■■□□ 2.11
TMEM260-214ENST00000556975 ARAP2Q8WZ64 1704 aa28.26■■■□□ 2.11
TMEM260-214ENST00000556975 RBM5P52756 815 aaKnown RBP eCLIP28.25■■■□□ 2.11
TMEM260-214ENST00000556975 REM2Q8IYK8 340 aaPredicted RBP28.25■■■□□ 2.11
TMEM260-214ENST00000556975 FRAT1Q92837 279 aaPredicted RBP28.25■■■□□ 2.11
TMEM260-214ENST00000556975 SIL1Q9H173 461 aa28.25■■■□□ 2.11
TMEM260-214ENST00000556975 CEP126Q9P2H0 1117 aa28.25■■■□□ 2.11
TMEM260-214ENST00000556975 TSKSQ9UJT2 592 aa28.25■■■□□ 2.11
TMEM260-214ENST00000556975 IL15P40933 162 aaPredicted RBP28.24■■■□□ 2.11
TMEM260-214ENST00000556975 HDLBPQ00341 1268 aaKnown RBP28.24■■■□□ 2.11
TMEM260-214ENST00000556975 MTX1Q13505 466 aa28.24■■■□□ 2.11
TMEM260-214ENST00000556975 TTLL12Q14166 644 aaPredicted RBP28.24■■■□□ 2.11
TMEM260-214ENST00000556975 MRIQ9BWK5 157 aa28.24■■■□□ 2.11
TMEM260-214ENST00000556975 AOX1Q06278 1338 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 CLRN2A0PK11 232 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 CHAF1AQ13111 956 aaPredicted RBP28.23■■■□□ 2.11
TMEM260-214ENST00000556975 ARMC9Q7Z3E5 817 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 ABHD8Q96I13 439 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 CSRNP1Q96S65 589 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 TNNQ9UQP3 1299 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 SUGT1Q9Y2Z0 365 aa28.23■■■□□ 2.11
TMEM260-214ENST00000556975 CRKP46108 304 aa28.22■■■□□ 2.11
TMEM260-214ENST00000556975 GRIK5Q16478 980 aa28.22■■■□□ 2.11
TMEM260-214ENST00000556975 SAGE1Q9NXZ1 904 aa28.22■■■□□ 2.11
TMEM260-214ENST00000556975 PA2G4Q9UQ80 394 aaKnown RBP28.22■■■□□ 2.11
TMEM260-214ENST00000556975 ZBED9Q6R2W3 1325 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms