RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	ANKRD18A	Q8IVF6	992 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	FBXW7	Q969H0	707 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	GCC1	Q96CN9	775 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	CFHR5	Q9BXR6	569 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	XDH	P47989	1333 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	ZNF646	O15015	1829 aa	Predicted RBP	11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	SASH1	O94885	1247 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	PCCA	P05165	728 aa	Predicted RBP	11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	HOXB7	P09629	217 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	NF2	P35240	595 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	SREBF2	Q12772	1141 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	LDLRAD1	Q5T700	205 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	OTOP1	Q7RTM1	612 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	TXNRD3	Q86VQ6	643 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	MINPP1	Q9UNW1	487 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	TRIM17	Q9Y577	477 aa		11.22	□□□□□ -0.61
SYNE2-222	ENST00000556725	BRCA2	P51587	3418 aa		11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	ELL2	O00472	640 aa	Predicted RBP	11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	EMP3	P54852	163 aa		11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	ARMC9	Q7Z3E5	817 aa		11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	OGFOD1	Q8N543	542 aa		11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	CCDC191	Q8NCU4	936 aa		11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	ANGEL1	Q9UNK9	670 aa	Known RBP	11.21	□□□□□ -0.61
SYNE2-222	ENST00000556725	EN2	P19622	333 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	CAP1	Q01518	475 aa		11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	GOLGA2	Q08379	1002 aa		11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	SLC10A4	Q96EP9	437 aa		11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	CLMN	Q96JQ2	1002 aa		11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	MBIP	Q9NS73	344 aa		11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	CWC25	Q9NXE8	425 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	SPEF2	Q9C093	1822 aa		11.2	□□□□□ -0.62
SYNE2-222	ENST00000556725	POTEB3	A0JP26	581 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	HSP90B1	P14625	803 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	KLRK1	P26718	216 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	CCT4	P50991	539 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	STRIP1	Q5VSL9	837 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	TTLL5	Q6EMB2	1281 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	POTEB	Q6S5H4	581 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	KIAA0825	Q8IV33	1275 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	PDCD7	Q8N8D1	485 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	TTLL11	Q8NHH1	800 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	RUNDC1	Q96C34	613 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	ZBED3	Q96IU2	234 aa	Predicted RBP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	METTL22	Q9BUU2	404 aa	Predicted RBP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	GREM2	Q9H772	168 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	BSDC1	Q9NW68	430 aa	Predicted RBP	11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	PCDHAC2	Q9Y5I4	1007 aa		11.19	□□□□□ -0.62
SYNE2-222	ENST00000556725	MED23	Q9ULK4	1368 aa		11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	MANSC4	A6NHS7	340 aa	Predicted RBP	11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	ALDH1A1	P00352	501 aa		11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	FXR1	P51114	621 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	CTSW	P56202	376 aa		11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	INTS3	Q68E01	1043 aa	Known RBP	11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	CD99L2	Q8TCZ2	262 aa		11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	CDC5L	Q99459	802 aa	Known RBP	11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	COA1	Q9GZY4	146 aa		11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	PTPN22	Q9Y2R2	807 aa		11.18	□□□□□ -0.62
SYNE2-222	ENST00000556725	IGKV5-2	P06315	115 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	ZNF853	P0CG23	659 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	GJA5	P36382	358 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	INHBE	P58166	350 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	GTF2I	P78347	998 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	WNK4	Q96J92	1243 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	HS3ST6	Q96QI5	342 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	DEFB129	Q9H1M3	183 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	ADAMTS8	Q9UP79	889 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	MAP3K2	Q9Y2U5	619 aa		11.17	□□□□□ -0.62
SYNE2-222	ENST00000556725	MYO3B	Q8WXR4	1341 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	SNAP23	O00161	211 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	CRHR2	Q13324	411 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	MAP3K11	Q16584	847 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	C8orf58	Q8NAV2	365 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	PTPN18	Q99952	460 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	LEMD3	Q9Y2U8	911 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	KIAA0100	Q14667	2235 aa	Known RBP	11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	SSC5D	A1L4H1	1573 aa		11.16	□□□□□ -0.62
SYNE2-222	ENST00000556725	AOX1	Q06278	1338 aa		11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	RALBP1	Q15311	655 aa		11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	CWF19L2	Q2TBE0	894 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	CERS5	Q8N5B7	392 aa		11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	ARMC5	Q96C12	935 aa		11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	EFCC1	Q9HA90	598 aa		11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	MYH3	P11055	1940 aa		11.15	□□□□□ -0.62
SYNE2-222	ENST00000556725	ZNF804B	A4D1E1	1349 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	CLRN2	A0PK11	232 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	PI4KAP2	A4QPH2	592 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	USP2	O75604	605 aa	Predicted RBP	11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	ZBTB48	P10074	688 aa	Predicted RBP	11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	MMP14	P50281	582 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	DLGAP5	Q15398	846 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	PI4KAP1	Q8N8J0	262 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	ERO1A	Q96HE7	468 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	PRMT6	Q96LA8	375 aa	Predicted RBP	11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725	CD209	Q9NNX6	404 aa		11.14	□□□□□ -0.63
SYNE2-222	ENST00000556725		F8W031	263 aa	Predicted RBP	11.13	□□□□□ -0.63

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