RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 BCAR3O75815 825 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 SLC34A2O95436 690 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 CCT4P50991 539 aaKnown RBP8.08□□□□□ -1.12
TMEM260-209ENST00000556079 GRIPAP1Q4V328 841 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 USP50Q70EL3 339 aaPredicted RBP8.08□□□□□ -1.12
TMEM260-209ENST00000556079 TMC4Q7Z404 712 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 FBXW7Q969H0 707 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 CDC5LQ99459 802 aaKnown RBP8.08□□□□□ -1.12
TMEM260-209ENST00000556079 BSDC1Q9NW68 430 aaPredicted RBP8.08□□□□□ -1.12
TMEM260-209ENST00000556079 C9orf78Q9NZ63 289 aaPredicted RBP8.08□□□□□ -1.12
TMEM260-209ENST00000556079 CNOT7Q9UIV1 285 aaKnown RBP8.08□□□□□ -1.12
TMEM260-209ENST00000556079 PCDHAC2Q9Y5I4 1007 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 TLL2Q9Y6L7 1015 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 ANKRD18BA2A2Z9 1011 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ADM5C9JUS6 153 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ALDH1L1O75891 902 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 CELF2O95319 508 aaKnown RBP8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ATP2B4P23634 1241 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 IGHMBP2P38935 993 aaKnown RBP8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ECE1P42892 770 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 RARSP54136 660 aaKnown RBP8.07□□□□□ -1.12
TMEM260-209ENST00000556079 LRRC24Q50LG9 513 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 BEGAINQ9BUH8 593 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 CHMP4AQ9BY43 222 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ZC3H12CQ9C0D7 883 aaKnown RBP8.07□□□□□ -1.12
TMEM260-209ENST00000556079 USP44Q9H0E7 712 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ZNF408Q9H9D4 720 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ADARB2Q9NS39 739 aaKnown RBP8.07□□□□□ -1.12
TMEM260-209ENST00000556079 MED23Q9ULK4 1368 aa8.07□□□□□ -1.12
TMEM260-209ENST00000556079 ZNF804BA4D1E1 1349 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 MLLT1Q03111 559 aaPredicted RBP8.06□□□□□ -1.12
TMEM260-209ENST00000556079 IFIT5Q13325 482 aaKnown RBP8.06□□□□□ -1.12
TMEM260-209ENST00000556079 TNIP1Q15025 636 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 SAPCD2Q86UD0 394 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 USP48Q86UV5 1035 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 CERS5Q8N5B7 392 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 ZIC5Q96T25 663 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 EYA3Q99504 573 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 THSD7BQ9C0I4 1608 aa8.06□□□□□ -1.12
TMEM260-209ENST00000556079 UTYO14607 1347 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 PTPRCP08575 1304 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 G3V3G9 751 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 SASH1O94885 1247 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 VIL1P09327 827 aaKnown RBP8.05□□□□□ -1.12
TMEM260-209ENST00000556079 HSP90B1P14625 803 aaKnown RBP8.05□□□□□ -1.12
TMEM260-209ENST00000556079 GRIK5Q16478 980 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 ALDH1L2Q3SY69 923 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 DACT2Q5SW24 774 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 PRAMEF18Q5VWM3 479 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 RSBN1LQ6PCB5 846 aaPredicted RBP8.05□□□□□ -1.12
TMEM260-209ENST00000556079 CLUAP1Q96AJ1 413 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 RNF25Q96BH1 459 aaPredicted RBP8.05□□□□□ -1.12
TMEM260-209ENST00000556079 GMLQ99445 158 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 MPHOSPH8Q99549 860 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 MEIS3Q99687 375 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 MCOLN1Q9GZU1 580 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 VPS33BQ9H267 617 aa8.05□□□□□ -1.12
TMEM260-209ENST00000556079 IQSEC3Q9UPP2 1182 aaPredicted RBP8.05□□□□□ -1.12
TMEM260-209ENST00000556079 CASP8AP2Q9UKL3 1982 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 USP17L3A6NCW0 530 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 USP17L4A6NCW7 530 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 F8W031 263 aaPredicted RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 RIOK3O14730 519 aaKnown RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 MAP2K2P36507 400 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 GYG1P46976 350 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 KCNJ4P48050 445 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 RFX5P48382 616 aaPredicted RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 RGS19P49795 217 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 GTF2IP78347 998 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 KIF4BQ2VIQ3 1234 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 TAF7LQ5H9L4 462 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 LDHAL6AQ6ZMR3 332 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 USP17L1Q7RTZ2 530 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 FRAT1Q92837 279 aaPredicted RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 SIL1Q9H173 461 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 CNNM1Q9NRU3 951 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 GGA3Q9NZ52 723 aa8.04□□□□□ -1.12
TMEM260-209ENST00000556079 PA2G4Q9UQ80 394 aaKnown RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 LRRFIP2Q9Y608 721 aaKnown RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.04□□□□□ -1.12
TMEM260-209ENST00000556079 ARAP2Q8WZ64 1704 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 PDE4DIPQ5VU43 2346 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 COL1A1P02452 1464 aaPredicted RBP8.03□□□□□ -1.12
TMEM260-209ENST00000556079 H7C1D1 291 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 RLBP1P12271 317 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 TRIM27P14373 513 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 DGKZQ13574 1117 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 SCARF1Q14162 830 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 CCDC57Q2TAC2 916 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 NBPF9Q3BBW0 867 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 RABL6Q3YEC7 729 aaPredicted RBP8.03□□□□□ -1.12
TMEM260-209ENST00000556079 MOB2Q70IA6 237 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 KIAA0825Q8IV33 1275 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 CD209Q9NNX6 404 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 PGAP2Q9UHJ9 254 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 FZD1Q9UP38 647 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 RIPOR2Q9Y4F9 1068 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 MYH13Q9UKX3 1938 aa8.03□□□□□ -1.12
TMEM260-209ENST00000556079 ECM2O94769 699 aaPredicted RBP8.02□□□□□ -1.13
TMEM260-209ENST00000556079 BRPF1P55201 1214 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms