RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 USP17L3A6NCW0 530 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 USP17L4A6NCW7 530 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 PHKA1P46020 1223 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 GMPSP49915 693 aaPredicted RBP12.08□□□□□ -0.47
PSEN1-213ENST00000555386 TNNI3KQ59H18 835 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 TTLL5Q6EMB2 1281 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 USP17L1Q7RTZ2 530 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 PODNQ7Z5L7 613 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 ERC1Q8IUD2 1116 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 RHPN1Q8TCX5 695 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 FPGT-TNNI3KV9GXZ4 949 aa12.08□□□□□ -0.47
PSEN1-213ENST00000555386 SHTN1A0MZ66 631 aa12.08□□□□□ -0.48
PSEN1-213ENST00000555386 C15orf52Q6ZUT6 534 aaKnown RBP12.08□□□□□ -0.48
PSEN1-213ENST00000555386 AACSQ86V21 672 aa12.08□□□□□ -0.48
PSEN1-213ENST00000555386 GPC2Q8N158 579 aa12.08□□□□□ -0.48
PSEN1-213ENST00000555386 DBNDD2Q9BQY9 259 aa12.08□□□□□ -0.48
PSEN1-213ENST00000555386 TLR7Q9NYK1 1049 aaKnown RBP12.08□□□□□ -0.48
PSEN1-213ENST00000555386 ZNF609O15014 1411 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 PSME4Q14997 1843 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 ARAP2Q8WZ64 1704 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 F8W031 263 aaPredicted RBP12.07□□□□□ -0.48
PSEN1-213ENST00000555386 RAB11FIP3O75154 756 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 LMOD1P29536 600 aaPredicted RBP12.07□□□□□ -0.48
PSEN1-213ENST00000555386 EAPPQ56P03 285 aaPredicted RBP12.07□□□□□ -0.48
PSEN1-213ENST00000555386 RBM26Q5T8P6 1007 aaKnown RBP12.07□□□□□ -0.48
PSEN1-213ENST00000555386 FBXO33Q7Z6M2 555 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 SKAP1Q86WV1 359 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 EAF2Q96CJ1 260 aaPredicted RBP12.07□□□□□ -0.48
PSEN1-213ENST00000555386 KIF1BPQ96EK5 621 aa12.07□□□□□ -0.48
PSEN1-213ENST00000555386 IL1R1P14778 569 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 EPS15P42566 896 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 RGS3P49796 1198 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 TTC39AQ5SRH9 613 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 CCDC102BQ68D86 513 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 RSBN1LQ6PCB5 846 aaPredicted RBP12.06□□□□□ -0.48
PSEN1-213ENST00000555386 CLASRPQ8N2M8 674 aaKnown RBP12.06□□□□□ -0.48
PSEN1-213ENST00000555386 TDRD7Q8NHU6 1098 aaKnown RBP12.06□□□□□ -0.48
PSEN1-213ENST00000555386 LRRCC1Q9C099 1032 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 DCTPP1Q9H773 170 aa12.06□□□□□ -0.48
PSEN1-213ENST00000555386 GNL3LQ9NVN8 582 aaKnown RBP12.06□□□□□ -0.48
PSEN1-213ENST00000555386 VIL1P09327 827 aaKnown RBP12.05□□□□□ -0.48
PSEN1-213ENST00000555386 IFIT2P09913 472 aaKnown RBP12.05□□□□□ -0.48
PSEN1-213ENST00000555386 SCNN1DP51172 638 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 HDAC1Q13547 482 aaPredicted RBP12.05□□□□□ -0.48
PSEN1-213ENST00000555386 DACT2Q5SW24 774 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 STRIP1Q5VSL9 837 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 KIAA0825Q8IV33 1275 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 MICALL2Q8IY33 904 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 C16orf71Q8IYS4 520 aaPredicted RBP12.05□□□□□ -0.48
PSEN1-213ENST00000555386 SNRKQ9NRH2 765 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 CNOT7Q9UIV1 285 aaKnown RBP12.05□□□□□ -0.48
PSEN1-213ENST00000555386 HACL1Q9UJ83 578 aa12.05□□□□□ -0.48
PSEN1-213ENST00000555386 DBNLQ9UJU6 430 aaKnown RBP12.05□□□□□ -0.48
PSEN1-213ENST00000555386 WDR90Q96KV7 1748 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 POTECB2RU33 542 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 VEGFAP15692 232 aaPredicted RBP12.04□□□□□ -0.48
PSEN1-213ENST00000555386 MFSD14BQ5SR56 506 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 ANKRD45Q5TZF3 282 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 GPR108Q9NPR9 543 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 CLEC11AQ9Y240 323 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 POLR2AP24928 1970 aaKnown RBP12.04□□□□□ -0.48
PSEN1-213ENST00000555386 ZNF646O15015 1829 aaPredicted RBP12.04□□□□□ -0.48
PSEN1-213ENST00000555386 SCN4AP35499 1836 aa12.04□□□□□ -0.48
PSEN1-213ENST00000555386 H7C1D1 291 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 EPHX2P34913 555 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 SCARF1Q14162 830 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 TBC1D10BQ4KMP7 808 aaPredicted RBP12.03□□□□□ -0.48
PSEN1-213ENST00000555386 CCDC158Q5M9N0 1113 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 PI16Q6UXB8 463 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 SAMD7Q7Z3H4 446 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 IFNLR1Q8IU57 520 aaPredicted RBP12.03□□□□□ -0.48
PSEN1-213ENST00000555386 CERS5Q8N5B7 392 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 GPRC5DQ9NZD1 345 aa12.03□□□□□ -0.48
PSEN1-213ENST00000555386 MYO5AQ9Y4I1 1855 aaKnown RBP12.03□□□□□ -0.48
PSEN1-213ENST00000555386 IQCA1LA6NCM1 817 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 POTEIP0CG38 1075 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 POTEJP0CG39 1038 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 RASGRF1Q13972 1273 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 GRIK5Q16478 980 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 L3MBTL3Q96JM7 780 aaPredicted RBP12.02□□□□□ -0.48
PSEN1-213ENST00000555386 TAF1DQ9H5J8 278 aaPredicted RBP12.02□□□□□ -0.48
PSEN1-213ENST00000555386 ABCF2Q9UG63 623 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 NDUFB9Q9Y6M9 179 aa12.02□□□□□ -0.48
PSEN1-213ENST00000555386 COL1A1P02452 1464 aaPredicted RBP12.02□□□□□ -0.48
PSEN1-213ENST00000555386 USP17L8P0C7I0 530 aa12.02□□□□□ -0.49
PSEN1-213ENST00000555386 RPS12P25398 132 aaKnown RBP12.02□□□□□ -0.49
PSEN1-213ENST00000555386 RBM5P52756 815 aaKnown RBP eCLIP12.02□□□□□ -0.49
PSEN1-213ENST00000555386 TSHZ3Q63HK5 1081 aa12.02□□□□□ -0.49
PSEN1-213ENST00000555386 OGFOD1Q8N543 542 aa12.02□□□□□ -0.49
PSEN1-213ENST00000555386 AGBL3Q8NEM8 1001 aa12.02□□□□□ -0.49
PSEN1-213ENST00000555386 TRPM4Q8TD43 1214 aa12.02□□□□□ -0.49
PSEN1-213ENST00000555386 DENND2AQ9ULE3 1009 aa12.02□□□□□ -0.49
PSEN1-213ENST00000555386 AKAP11Q9UKA4 1901 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 FAM205AQ6ZU69 1335 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 ADAMTSL1Q8N6G6 1762 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 KIF3CO14782 793 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 EGFRP00533 1210 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 UQCRFS1P1P0C7P4 283 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 MCAMP43121 646 aa12.01□□□□□ -0.49
PSEN1-213ENST00000555386 TBC1D9Q6ZT07 1266 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms