RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 KCTD17Q8N5Z5 321 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 MYD88Q99836 296 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 BICC1Q9H694 974 aaKnown RBP7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 BTG4Q9NY30 223 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 THRAP3Q9Y2W1 955 aaKnown RBP7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 MYH3P11055 1940 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 TJP1Q07157 1748 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 K7ELQ4 463 aaPredicted RBP7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 VSIG8P0DPA2 414 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 CNTROBQ8N137 903 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 CCDC191Q8NCU4 936 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 DDX54Q8TDD1 881 aaKnown RBP7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 ZFP42Q96MM3 310 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 IL1RAPL2Q9NP60 686 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 STRN4Q9NRL3 753 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 ATG3Q9NT62 314 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 WASF2Q9Y6W5 498 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 ANKRD36CQ5JPF3 1778 aa7.32□□□□□ -1.24
VIPAS39-204ENST00000553576 CICQ96RK0 1608 aaPredicted RBP7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 EXOC5O00471 708 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 BCL9O00512 1426 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 GPR37O15354 613 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 SGSM2O43147 1006 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 FRAT2O75474 233 aaPredicted RBP7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 MCM2P49736 904 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 PTPN12Q05209 780 aaKnown RBP7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 RBM26Q5T8P6 1007 aaKnown RBP7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 CLEC17AQ6ZS10 378 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 NUTM1Q86Y26 1132 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 UNC5CLQ8IV45 518 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 PIGBQ92521 554 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 GPATCH3Q96I76 525 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 ISCA1Q9BUE6 129 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 SNRKQ9NRH2 765 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 ECHDC1Q9NTX5 307 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 TMOD3Q9NYL9 352 aa7.31□□□□□ -1.24
VIPAS39-204ENST00000553576 A0A087WZG4 1122 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 HIP1O00291 1037 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 A1BGP04217 495 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 IFIT2P09913 472 aaKnown RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 MCCP23508 829 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 FOXO4P98177 505 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 OS9Q13438 667 aaPredicted RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 TCIRG1Q13488 830 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 EPHA10Q5JZY3 1008 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 EHBP1Q8NDI1 1231 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 RUFY2Q8WXA3 655 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 KCNB2Q92953 911 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 RILPL2Q969X0 211 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 EAF2Q96CJ1 260 aaPredicted RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 EVI5LQ96CN4 794 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 PLA2G12BQ9BX93 195 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 SLKQ9H2G2 1235 aaPredicted RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 CWC22Q9HCG8 908 aaKnown RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 GPR108Q9NPR9 543 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 CWC25Q9NXE8 425 aaPredicted RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 PA2G4Q9UQ80 394 aaKnown RBP7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 ZNF831Q5JPB2 1677 aa7.3□□□□□ -1.24
VIPAS39-204ENST00000553576 STARD3NLO95772 234 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 HSPA4P34932 840 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 RAB3GAP1Q15042 981 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 TSHZ3Q63HK5 1081 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 TTLL7Q6ZT98 887 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 ASAP1Q9ULH1 1129 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 SPEF2Q9C093 1822 aa7.29□□□□□ -1.24
VIPAS39-204ENST00000553576 RREB1Q92766 1687 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 SPATA31A1Q5TZJ5 1347 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 ERVV-1B6SEH8 477 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 PTCD1O75127 700 aaKnown RBP7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 CD46P15529 392 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 ATP5JP18859 108 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 MCM4P33991 863 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 DEKP35659 375 aaKnown RBP7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 BARGINQ6ZT62 677 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 UBE3BQ7Z3V4 1068 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 AACSQ86V21 672 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 HLA-CQ95604 372 aa7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 LSG1Q9H089 658 aaKnown RBP7.28□□□□□ -1.24
VIPAS39-204ENST00000553576 RAD50Q92878 1312 aa7.27□□□□□ -1.24
VIPAS39-204ENST00000553576 SLIT2O94813 1529 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 DOT1LQ8TEK3 1739 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 ATP5J2-PTCD1G3V325 749 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 TOM1O60784 492 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 KDM4AO75164 1064 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 CIAO1O76071 339 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 PCCAP05165 728 aaPredicted RBP7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 CSF1RP07333 972 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 CYP19A1P11511 503 aaPredicted RBP7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 JUNDP17535 347 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 PTMSP20962 102 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 PIP4K2AP48426 406 aaPredicted RBP7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 CUL4AQ13619 759 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 HSP90AB3PQ58FF7 597 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 LMBR1LQ6UX01 489 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 GIGYF2Q6Y7W6 1299 aaKnown RBP7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 DNAJC10Q8IXB1 793 aa7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 INTS4Q96HW7 963 aaKnown RBP7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.27□□□□□ -1.25
VIPAS39-204ENST00000553576 RFX7Q2KHR2 1363 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms