RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 GBA2Q9HCG7 927 aaPredicted RBP22.89■■□□□ 1.25
SHMT2-206ENST00000553529 PA2G4Q9UQ80 394 aaKnown RBP22.89■■□□□ 1.25
SHMT2-206ENST00000553529 TRIM27P14373 513 aa22.88■■□□□ 1.25
SHMT2-206ENST00000553529 BRPF1P55201 1214 aaPredicted RBP22.88■■□□□ 1.25
SHMT2-206ENST00000553529 PTPN12Q05209 780 aaKnown RBP22.88■■□□□ 1.25
SHMT2-206ENST00000553529 ZBED3Q96IU2 234 aaPredicted RBP22.88■■□□□ 1.25
SHMT2-206ENST00000553529 API5Q9BZZ5 524 aaKnown RBP22.88■■□□□ 1.25
SHMT2-206ENST00000553529 UBTFL1P0CB47 393 aaPredicted RBP22.87■■□□□ 1.25
SHMT2-206ENST00000553529 ATG9AQ7Z3C6 839 aa22.87■■□□□ 1.25
SHMT2-206ENST00000553529 ARAP2Q8WZ64 1704 aa22.87■■□□□ 1.25
SHMT2-206ENST00000553529 MROH5Q6ZUA9 1318 aa22.86■■□□□ 1.25
SHMT2-206ENST00000553529 MYO3BQ8WXR4 1341 aa22.86■■□□□ 1.25
SHMT2-206ENST00000553529 LBX1P52954 281 aa22.86■■□□□ 1.25
SHMT2-206ENST00000553529 UBE4AQ14139 1066 aa22.86■■□□□ 1.25
SHMT2-206ENST00000553529 TDRD7Q8NHU6 1098 aaKnown RBP22.86■■□□□ 1.25
SHMT2-206ENST00000553529 CLRN2A0PK11 232 aa22.85■■□□□ 1.25
SHMT2-206ENST00000553529 FAM155AB1AL88 458 aaPredicted RBP22.85■■□□□ 1.25
SHMT2-206ENST00000553529 HSPA8P11142 646 aaKnown RBP22.85■■□□□ 1.25
SHMT2-206ENST00000553529 HIBADHP31937 336 aaKnown RBP22.85■■□□□ 1.25
SHMT2-206ENST00000553529 BCAMP50895 628 aa22.85■■□□□ 1.25
SHMT2-206ENST00000553529 OGFOD1Q8N543 542 aa22.85■■□□□ 1.25
SHMT2-206ENST00000553529 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.85■■□□□ 1.25
SHMT2-206ENST00000553529 COL1A1P02452 1464 aaPredicted RBP22.85■■□□□ 1.25
SHMT2-206ENST00000553529 PDE8BO95263 885 aa22.84■■□□□ 1.25
SHMT2-206ENST00000553529 CHAF1AQ13111 956 aaPredicted RBP22.84■■□□□ 1.25
SHMT2-206ENST00000553529 EYA2O00167 538 aa22.83■■□□□ 1.25
SHMT2-206ENST00000553529 ECE1P42892 770 aa22.83■■□□□ 1.25
SHMT2-206ENST00000553529 PRKG1Q13976 671 aa22.83■■□□□ 1.25
SHMT2-206ENST00000553529 CFAP100Q494V2 611 aa22.83■■□□□ 1.25
SHMT2-206ENST00000553529 FBXO33Q7Z6M2 555 aa22.83■■□□□ 1.25
SHMT2-206ENST00000553529 PRMT6Q96LA8 375 aaPredicted RBP22.83■■□□□ 1.25
SHMT2-206ENST00000553529 KIF16BQ96L93 1317 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 SSC5DA1L4H1 1573 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 CAPN15O75808 1086 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 FGFR2P21802 821 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 MFSD14BQ5SR56 506 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 INTS3Q68E01 1043 aaKnown RBP22.82■■□□□ 1.24
SHMT2-206ENST00000553529 C2orf69Q8N8R5 385 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 ECM29Q5VYK3 1845 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 FAM205AQ6ZU69 1335 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 PITPNM2Q9BZ72 1349 aa22.82■■□□□ 1.24
SHMT2-206ENST00000553529 PAPPA2Q9BXP8 1791 aa22.81■■□□□ 1.24
SHMT2-206ENST00000553529 UBE2Q2LH0YL09 131 aa22.81■■□□□ 1.24
SHMT2-206ENST00000553529 RGMBQ6NW40 437 aa22.81■■□□□ 1.24
SHMT2-206ENST00000553529 TNS4Q8IZW8 715 aa22.81■■□□□ 1.24
SHMT2-206ENST00000553529 AIDAQ96BJ3 306 aa22.81■■□□□ 1.24
SHMT2-206ENST00000553529 CDAN1Q8IWY9 1227 aa22.8■■□□□ 1.24
SHMT2-206ENST00000553529 TMEM57Q8N5G2 664 aa22.8■■□□□ 1.24
SHMT2-206ENST00000553529 HHIPL1Q96JK4 782 aa22.8■■□□□ 1.24
SHMT2-206ENST00000553529 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.8■■□□□ 1.24
SHMT2-206ENST00000553529 HDAC9Q9UKV0 1011 aa22.8■■□□□ 1.24
SHMT2-206ENST00000553529 CTCFP49711 727 aaPredicted RBP22.79■■□□□ 1.24
SHMT2-206ENST00000553529 ZNF157P51786 506 aaPredicted RBP22.79■■□□□ 1.24
SHMT2-206ENST00000553529 DLGAP5Q15398 846 aa22.79■■□□□ 1.24
SHMT2-206ENST00000553529 ATF7IPQ6VMQ6 1270 aa22.79■■□□□ 1.24
SHMT2-206ENST00000553529 ARHGAP45Q92619 1136 aa22.79■■□□□ 1.24
SHMT2-206ENST00000553529 TTF2Q9UNY4 1162 aaKnown RBP22.79■■□□□ 1.24
SHMT2-206ENST00000553529 SPDYE2BA6NHP3 402 aa22.78■■□□□ 1.24
SHMT2-206ENST00000553529 SPDYE6P0CI01 402 aa22.78■■□□□ 1.24
SHMT2-206ENST00000553529 RLBP1P12271 317 aa22.78■■□□□ 1.24
SHMT2-206ENST00000553529 ADORA1P30542 326 aa22.78■■□□□ 1.24
SHMT2-206ENST00000553529 RBM5P52756 815 aaKnown RBP eCLIP22.78■■□□□ 1.24
SHMT2-206ENST00000553529 MAP2K1Q02750 393 aaPredicted RBP22.78■■□□□ 1.24
SHMT2-206ENST00000553529 MKRN3Q13064 507 aaKnown RBP22.77■■□□□ 1.24
SHMT2-206ENST00000553529 PUM3Q15397 648 aaKnown RBP22.77■■□□□ 1.24
SHMT2-206ENST00000553529 RASAL3Q86YV0 1011 aa22.77■■□□□ 1.24
SHMT2-206ENST00000553529 C1orf115Q9H7X2 142 aa22.77■■□□□ 1.24
SHMT2-206ENST00000553529 VEZTQ9HBM0 779 aa22.77■■□□□ 1.24
SHMT2-206ENST00000553529 MYH13Q9UKX3 1938 aa22.76■■□□□ 1.23
SHMT2-206ENST00000553529 FKBP1AP62942 108 aaKnown RBP22.76■■□□□ 1.23
SHMT2-206ENST00000553529 KIF23Q02241 960 aaPredicted RBP22.76■■□□□ 1.23
SHMT2-206ENST00000553529 VPS37DQ86XT2 251 aa22.76■■□□□ 1.23
SHMT2-206ENST00000553529 TDRD3Q9H7E2 651 aaKnown RBP22.76■■□□□ 1.23
SHMT2-206ENST00000553529 PNMA6EA0A0J9YXQ4 647 aa22.75■■□□□ 1.23
SHMT2-206ENST00000553529 SLC10A3P09131 477 aa22.75■■□□□ 1.23
SHMT2-206ENST00000553529 MAP2K2P36507 400 aa22.75■■□□□ 1.23
SHMT2-206ENST00000553529 CACNB3P54284 484 aa22.75■■□□□ 1.23
SHMT2-206ENST00000553529 TTLL12Q14166 644 aaPredicted RBP22.75■■□□□ 1.23
SHMT2-206ENST00000553529 ZBED9Q6R2W3 1325 aa22.75■■□□□ 1.23
SHMT2-206ENST00000553529 MTMR14Q8NCE2 650 aa22.74■■□□□ 1.23
SHMT2-206ENST00000553529 DEFB129Q9H1M3 183 aa22.74■■□□□ 1.23
SHMT2-206ENST00000553529 SRGAP3O43295 1099 aa22.73■■□□□ 1.23
SHMT2-206ENST00000553529 PHKA1P46020 1223 aa22.73■■□□□ 1.23
SHMT2-206ENST00000553529 CRKP46108 304 aa22.73■■□□□ 1.23
SHMT2-206ENST00000553529 ATP2B3Q16720 1220 aa22.73■■□□□ 1.23
SHMT2-206ENST00000553529 CAVIN4Q5BKX8 364 aa22.73■■□□□ 1.23
SHMT2-206ENST00000553529 ZKSCAN2Q63HK3 967 aa22.73■■□□□ 1.23
SHMT2-206ENST00000553529 APOBEC3FQ8IUX4 373 aaKnown RBP22.73■■□□□ 1.23
SHMT2-206ENST00000553529 FRAT2O75474 233 aaPredicted RBP22.72■■□□□ 1.23
SHMT2-206ENST00000553529 IFIT1P09914 478 aaKnown RBP22.72■■□□□ 1.23
SHMT2-206ENST00000553529 SLC5A1P13866 664 aa22.72■■□□□ 1.23
SHMT2-206ENST00000553529 NOGQ13253 232 aa22.72■■□□□ 1.23
SHMT2-206ENST00000553529 NBPF12Q5TAG4 269 aaPredicted RBP22.72■■□□□ 1.23
SHMT2-206ENST00000553529 COPRSQ9NQ92 184 aa22.72■■□□□ 1.23
SHMT2-206ENST00000553529 PRDM10Q9NQV6 1147 aa22.72■■□□□ 1.23
SHMT2-206ENST00000553529 ZNF70Q9UC06 446 aaPredicted RBP22.72■■□□□ 1.23
SHMT2-206ENST00000553529 CIAO1O76071 339 aa22.71■■□□□ 1.23
SHMT2-206ENST00000553529 TFCP2Q12800 502 aa22.71■■□□□ 1.23
SHMT2-206ENST00000553529 DZIP1LQ8IYY4 767 aaKnown RBP22.71■■□□□ 1.23
SHMT2-206ENST00000553529 LPIN2Q92539 896 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms