RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 MCOLN1Q9GZU1 580 aa16.04■□□□□ 0.16
LINC00643-202ENST00000553426 PAPPA2Q9BXP8 1791 aa16.04■□□□□ 0.16
LINC00643-202ENST00000553426 IRS2Q9Y4H2 1338 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 F8W031 263 aaPredicted RBP16.03■□□□□ 0.16
LINC00643-202ENST00000553426 UBE2Q2LH0YL09 131 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 TRPA1O75762 1119 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 HIBADHP31937 336 aaKnown RBP16.03■□□□□ 0.16
LINC00643-202ENST00000553426 RBM5P52756 815 aaKnown RBP eCLIP16.03■□□□□ 0.16
LINC00643-202ENST00000553426 SLFN5Q08AF3 891 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 ALDH1L2Q3SY69 923 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 ARMC9Q7Z3E5 817 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 VPS37DQ86XT2 251 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 RASAL3Q86YV0 1011 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 SSH1Q8WYL5 1049 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 CSRNP1Q96S65 589 aa16.03■□□□□ 0.16
LINC00643-202ENST00000553426 BICC1Q9H694 974 aaKnown RBP16.03■□□□□ 0.16
LINC00643-202ENST00000553426 CERS5Q8N5B7 392 aa16.02■□□□□ 0.16
LINC00643-202ENST00000553426 MTMR14Q8NCE2 650 aa16.02■□□□□ 0.16
LINC00643-202ENST00000553426 ZBED3Q96IU2 234 aaPredicted RBP16.02■□□□□ 0.16
LINC00643-202ENST00000553426 RNF186Q9NXI6 227 aa16.02■□□□□ 0.16
LINC00643-202ENST00000553426 RABL6Q3YEC7 729 aaPredicted RBP16.01■□□□□ 0.15
LINC00643-202ENST00000553426 CFAP100Q494V2 611 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 MOB2Q70IA6 237 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 KAZALD1Q96I82 304 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 DEFB129Q9H1M3 183 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 SMC4Q9NTJ3 1288 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 JAG2Q9Y219 1238 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 RIPOR2Q9Y4F9 1068 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 PPP2R3BQ9Y5P8 575 aa16.01■□□□□ 0.15
LINC00643-202ENST00000553426 COL1A1P02452 1464 aaPredicted RBP16■□□□□ 0.15
LINC00643-202ENST00000553426 FRAT2O75474 233 aaPredicted RBP16■□□□□ 0.15
LINC00643-202ENST00000553426 CT47B1P0C2W7 299 aaPredicted RBP16■□□□□ 0.15
LINC00643-202ENST00000553426 DGKZQ13574 1117 aa16■□□□□ 0.15
LINC00643-202ENST00000553426 CAVIN4Q5BKX8 364 aa16■□□□□ 0.15
LINC00643-202ENST00000553426 METTL24Q5JXM2 366 aa16■□□□□ 0.15
LINC00643-202ENST00000553426 MFSD14BQ5SR56 506 aa16■□□□□ 0.15
LINC00643-202ENST00000553426 PUS3Q9BZE2 481 aaKnown RBP16■□□□□ 0.15
LINC00643-202ENST00000553426 VEZTQ9HBM0 779 aa16■□□□□ 0.15
LINC00643-202ENST00000553426 FAM205AQ6ZU69 1335 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 ZNF646O15015 1829 aaPredicted RBP15.99■□□□□ 0.15
LINC00643-202ENST00000553426 SPDYE2BA6NHP3 402 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 PPP1R12BO60237 982 aaPredicted RBP15.99■□□□□ 0.15
LINC00643-202ENST00000553426 SPDYE6P0CI01 402 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 GYG1P46976 350 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 PRKG1Q13976 671 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 SUPT20HL1Q3ZLR7 823 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 TDRD7Q8NHU6 1098 aaKnown RBP15.99■□□□□ 0.15
LINC00643-202ENST00000553426 FAM84BQ96KN1 310 aaPredicted RBP15.99■□□□□ 0.15
LINC00643-202ENST00000553426 PCDH10Q9P2E7 1040 aa15.99■□□□□ 0.15
LINC00643-202ENST00000553426 CCER2I3L3R5 266 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 SREBF2Q12772 1141 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 TNFAIP1Q13829 316 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 ANKRD44Q8N8A2 993 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 CDCA7LQ96GN5 454 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 USP44Q9H0E7 712 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 ANGEL1Q9UNK9 670 aaKnown RBP15.98■□□□□ 0.15
LINC00643-202ENST00000553426 TTF2Q9UNY4 1162 aaKnown RBP15.98■□□□□ 0.15
LINC00643-202ENST00000553426 HDAC5Q9UQL6 1122 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 AKAP11Q9UKA4 1901 aa15.98■□□□□ 0.15
LINC00643-202ENST00000553426 CLRN2A0PK11 232 aa15.97■□□□□ 0.15
LINC00643-202ENST00000553426 PDE8BO95263 885 aa15.97■□□□□ 0.15
LINC00643-202ENST00000553426 PTPN12Q05209 780 aaKnown RBP15.97■□□□□ 0.15
LINC00643-202ENST00000553426 PRMT6Q96LA8 375 aaPredicted RBP15.97■□□□□ 0.15
LINC00643-202ENST00000553426 SERPINA10Q9UK55 444 aa15.97■□□□□ 0.15
LINC00643-202ENST00000553426 A0A1B0GUL6 1792 aa15.97■□□□□ 0.15
LINC00643-202ENST00000553426 LRRC24Q50LG9 513 aa15.96■□□□□ 0.15
LINC00643-202ENST00000553426 FBXO33Q7Z6M2 555 aa15.96■□□□□ 0.15
LINC00643-202ENST00000553426 TBC1D22AQ8WUA7 517 aa15.96■□□□□ 0.15
LINC00643-202ENST00000553426 SLC10A4Q96EP9 437 aa15.96■□□□□ 0.15
LINC00643-202ENST00000553426 UNCXA6NJT0 531 aa15.95■□□□□ 0.14
LINC00643-202ENST00000553426 IFIT1P09914 478 aaKnown RBP15.95■□□□□ 0.14
LINC00643-202ENST00000553426 IREB2P48200 963 aaKnown RBP15.95■□□□□ 0.14
LINC00643-202ENST00000553426 TM4SF4P48230 202 aa15.95■□□□□ 0.14
LINC00643-202ENST00000553426 MKRN3Q13064 507 aaKnown RBP15.95■□□□□ 0.14
LINC00643-202ENST00000553426 LDLRAD1Q5T700 205 aa15.95■□□□□ 0.14
LINC00643-202ENST00000553426 API5Q9BZZ5 524 aaKnown RBP15.95■□□□□ 0.14
LINC00643-202ENST00000553426 PCDHAC2Q9Y5I4 1007 aa15.95■□□□□ 0.14
LINC00643-202ENST00000553426 UBTFL1P0CB47 393 aaPredicted RBP15.94■□□□□ 0.14
LINC00643-202ENST00000553426 TNNI2P48788 182 aa15.94■□□□□ 0.14
LINC00643-202ENST00000553426 CHAF1AQ13111 956 aaPredicted RBP15.94■□□□□ 0.14
LINC00643-202ENST00000553426 PUM3Q15397 648 aaKnown RBP15.94■□□□□ 0.14
LINC00643-202ENST00000553426 MAP3K11Q16584 847 aa15.94■□□□□ 0.14
LINC00643-202ENST00000553426 TRMT2AQ8IZ69 625 aaKnown RBP15.94■□□□□ 0.14
LINC00643-202ENST00000553426 KLHDC4Q8TBB5 520 aa15.94■□□□□ 0.14
LINC00643-202ENST00000553426 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.94■□□□□ 0.14
LINC00643-202ENST00000553426 IQSEC3Q9UPP2 1182 aaPredicted RBP15.94■□□□□ 0.14
LINC00643-202ENST00000553426 EYA2O00167 538 aa15.93■□□□□ 0.14
LINC00643-202ENST00000553426 INHBEP58166 350 aa15.93■□□□□ 0.14
LINC00643-202ENST00000553426 RASA3Q14644 834 aa15.93■□□□□ 0.14
LINC00643-202ENST00000553426 SPDYE2Q495Y8 402 aa15.93■□□□□ 0.14
LINC00643-202ENST00000553426 SPRYD7Q5W111 196 aa15.93■□□□□ 0.14
LINC00643-202ENST00000553426 DZIP1LQ8IYY4 767 aaKnown RBP15.93■□□□□ 0.14
LINC00643-202ENST00000553426 ZNF70Q9UC06 446 aaPredicted RBP15.93■□□□□ 0.14
LINC00643-202ENST00000553426 NOB1Q9ULX3 412 aaKnown RBP15.93■□□□□ 0.14
LINC00643-202ENST00000553426 ALDH1A1P00352 501 aa15.92■□□□□ 0.14
LINC00643-202ENST00000553426 ZBTB48P10074 688 aaPredicted RBP15.92■□□□□ 0.14
LINC00643-202ENST00000553426 SLC5A1P13866 664 aa15.92■□□□□ 0.14
LINC00643-202ENST00000553426 CRKP46108 304 aa15.92■□□□□ 0.14
LINC00643-202ENST00000553426 HDLBPQ00341 1268 aaKnown RBP15.92■□□□□ 0.14
LINC00643-202ENST00000553426 CTU1Q7Z7A3 348 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms