RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAD17O75943 681 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 CHRNDQ07001 517 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 CXCL9Q07325 125 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 CAVIN1Q6NZI2 390 aaKnown RBP9.2□□□□□ -0.94
LIMA1-216ENST00000552909 LDHAL6AQ6ZMR3 332 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 TXNRD3Q86VQ6 643 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 MYRIPQ8NFW9 859 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 VPS33BQ9H267 617 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 GJA3Q9Y6H8 435 aa9.2□□□□□ -0.94
LIMA1-216ENST00000552909 UBTFL1P0CB47 393 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-216ENST00000552909 VEGFAP15692 232 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-216ENST00000552909 KLRK1P26718 216 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 ZC3H12CQ9C0D7 883 aaKnown RBP9.19□□□□□ -0.94
LIMA1-216ENST00000552909 ZNRF3Q9ULT6 936 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 LRRFIP2Q9Y608 721 aaKnown RBP9.19□□□□□ -0.94
LIMA1-216ENST00000552909 POTEIP0CG38 1075 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 POTEJP0CG39 1038 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 EIF6P56537 245 aaKnown RBP9.19□□□□□ -0.94
LIMA1-216ENST00000552909 C1QTNF8P60827 252 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 HDAC1Q13547 482 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-216ENST00000552909 TAF7LQ5H9L4 462 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 GPC2Q8N158 579 aa9.19□□□□□ -0.94
LIMA1-216ENST00000552909 SCN9AQ15858 1988 aa9.18□□□□□ -0.94
LIMA1-216ENST00000552909 WDR90Q96KV7 1748 aa9.18□□□□□ -0.94
LIMA1-216ENST00000552909 CBX1P83916 185 aa9.18□□□□□ -0.94
LIMA1-216ENST00000552909 LRRC24Q50LG9 513 aa9.18□□□□□ -0.94
LIMA1-216ENST00000552909 MCTP1Q6DN14 999 aa9.18□□□□□ -0.94
LIMA1-216ENST00000552909 CNNM1Q9NRU3 951 aa9.18□□□□□ -0.94
LIMA1-216ENST00000552909 ECE2O60344 883 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 ATP2B4P23634 1241 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 RFX5P48382 616 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 SCNN1DP51172 638 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 TAF3Q5VWG9 929 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 L3MBTL3Q96JM7 780 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 PRIMPOLQ96LW4 560 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 EYA3Q99504 573 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 NAP1L2Q9ULW6 460 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 ZBTB12Q9Y330 459 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 RIPOR2Q9Y4F9 1068 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 ZNF804BA4D1E1 1349 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 TOMM70O94826 608 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 CD2BP2O95400 341 aaKnown RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 HMGN5P82970 282 aaKnown RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 PTPN12Q05209 780 aaKnown RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 DNTTIP2Q5QJE6 756 aaKnown RBP9.17□□□□□ -0.94
LIMA1-216ENST00000552909 KIF2CQ99661 725 aa9.17□□□□□ -0.94
LIMA1-216ENST00000552909 SHTN1A0MZ66 631 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 PSMD14O00487 310 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 PDIA4P13667 645 aaKnown RBP9.16□□□□□ -0.94
LIMA1-216ENST00000552909 EPS15P42566 896 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 NUCB2P80303 420 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 CIAPIN1Q6FI81 312 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 ANKRD2Q9GZV1 360 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 TAF1DQ9H5J8 278 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-216ENST00000552909 LMBRD1Q9NUN5 540 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 PA2G4Q9UQ80 394 aaKnown RBP9.16□□□□□ -0.94
LIMA1-216ENST00000552909 LEMD3Q9Y2U8 911 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 A0A1B0GUL6 1792 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 PTMAP06454 111 aaKnown RBP9.16□□□□□ -0.94
LIMA1-216ENST00000552909 GNAI3P08754 354 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 GTF2F1P35269 517 aaKnown RBP eCLIP9.16□□□□□ -0.94
LIMA1-216ENST00000552909 SIRT2Q8IXJ6 389 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 C16orf71Q8IYS4 520 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-216ENST00000552909 ZNF710Q8N1W2 664 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 SIL1Q9H173 461 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 IRS2Q9Y4H2 1338 aa9.16□□□□□ -0.94
LIMA1-216ENST00000552909 G3V3G9 751 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 GNAI2P04899 355 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 KCNJ4P48050 445 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 GMPSP49915 693 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-216ENST00000552909 DCAF8Q5TAQ9 597 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 LRSAM1Q6UWE0 723 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 HACL1Q9UJ83 578 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 SCN4AP35499 1836 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 MED23Q9ULK4 1368 aa9.15□□□□□ -0.94
LIMA1-216ENST00000552909 PNMA6EA0A0J9YXQ4 647 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 IQCA1LA6NCM1 817 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 EPHX2P34913 555 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 ATG9AQ7Z3C6 839 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 RPAP2Q8IXW5 612 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-216ENST00000552909 VGLL2Q8N8G2 317 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 MXD3Q9BW11 206 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 SRGAP3O43295 1099 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 TNIP1Q15025 636 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 ATP2B3Q16720 1220 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 EAPPQ56P03 285 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-216ENST00000552909 METTL24Q5JXM2 366 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 RBM46Q8TBY0 533 aaKnown RBP9.14□□□□□ -0.95
LIMA1-216ENST00000552909 IPO4Q8TEX9 1081 aaKnown RBP9.14□□□□□ -0.95
LIMA1-216ENST00000552909 TMEM51Q9NW97 253 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 GPRC5DQ9NZD1 345 aa9.14□□□□□ -0.95
LIMA1-216ENST00000552909 EYA2O00167 538 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 PDE8BO95263 885 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 EGFRP00533 1210 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 VIL1P09327 827 aaKnown RBP9.13□□□□□ -0.95
LIMA1-216ENST00000552909 BMP2KLQ5H9B9 411 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 CEP85Q6P2H3 762 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 PODNQ7Z5L7 613 aa9.13□□□□□ -0.95
LIMA1-216ENST00000552909 CNOT7Q9UIV1 285 aaKnown RBP9.13□□□□□ -0.95
LIMA1-216ENST00000552909 KIF3AQ9Y496 699 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms