RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 BABAM1Q9NWV8 329 aa7.92□□□□□ -1.14
DEPDC4-209ENST00000550587 SRP68Q9UHB9 627 aaKnown RBP7.92□□□□□ -1.14
DEPDC4-209ENST00000550587 GTF3C3Q9Y5Q9 886 aa7.92□□□□□ -1.14
DEPDC4-209ENST00000550587 GOLGB1Q14789 3259 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 POLRMTO00411 1230 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 RNMTO43148 476 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 LILRB3O75022 631 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 LMNB1P20700 586 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 KCNA3P22001 575 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 TM4SF1P30408 202 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 SCARF1Q14162 830 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 DCTN1Q14203 1278 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 MCM10Q7L590 875 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 DNAJC10Q8IXB1 793 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 TTLL6Q8N841 843 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 SMC1BQ8NDV3 1235 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 IL17REQ8NFR9 667 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 THUMPD2Q9BTF0 503 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 ZFAND3Q9H8U3 227 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 NARFQ9UHQ1 456 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 FANCIQ9NVI1 1328 aa7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 ZC3H4Q9UPT8 1303 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 KDM6AO15550 1401 aaPredicted RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 COL5A3P25940 1745 aaPredicted RBP7.91□□□□□ -1.14
DEPDC4-209ENST00000550587 ERBB4Q15303 1308 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 ZIC2O95409 532 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 SERPINB2P05120 415 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 NEFLP07196 543 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 NR3C2P08235 984 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 CYP19A1P11511 503 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 VEGFAP15692 232 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 CHRNA5P30532 468 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 PDE6BP35913 854 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 GRM5P41594 1212 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 TEFQ10587 303 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 TAF7Q15545 349 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 RTL5Q5HYW3 569 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 INTS5Q6P9B9 1019 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 DNAJC5GQ8N7S2 189 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 TSR2Q969E8 191 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 ZNF428Q96B54 188 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 ITPKCQ96DU7 683 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 MBIPQ9NS73 344 aa7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 LAS1LQ9Y4W2 734 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-209ENST00000550587 ARFGEF1Q9Y6D6 1849 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 COL15A1P39059 1388 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 CEMIPQ8WUJ3 1361 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 SOS1Q07889 1333 aaPredicted RBP7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 GLTPD2A6NH11 291 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 H3BM21 787 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 CANXP27824 592 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 EXOSC9Q06265 439 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 DDR1Q08345 913 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 SLC39A6Q13433 755 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 ERICH6BQ5W0A0 696 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 BICDL1Q6ZP65 573 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 C2CD5Q86YS7 1000 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 NPAS3Q8IXF0 933 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 IRF7Q92985 503 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 KLRG1Q96E93 195 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 LGR6Q9HBX8 967 aa7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 ZNF330Q9Y3S2 320 aaPredicted RBP7.89□□□□□ -1.15
DEPDC4-209ENST00000550587 MYH14Q7Z406 1995 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 RARSP54136 660 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 NR5A1Q13285 461 aa7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 NFIXQ14938 502 aa7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 TUSC1Q2TAM9 212 aa7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 C6orf118Q5T5N4 469 aa7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 BPHLQ86WA6 291 aaPredicted RBP7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 ZNF622Q969S3 477 aaKnown RBP eCLIP7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 SCN11AQ9UI33 1791 aa7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 KCPQ6ZWJ8 1503 aa7.88□□□□□ -1.15
DEPDC4-209ENST00000550587 VAMP4O75379 141 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 LORP23490 312 aaPredicted RBP7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 CLK2P49760 499 aaKnown RBP7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 RRP1P56182 461 aaKnown RBP7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 ST5P78524 1137 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 ALDH1L2Q3SY69 923 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 SOGA3Q5TF21 947 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 SETDB2Q96T68 719 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 POLR3EQ9NVU0 708 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 MIS18AQ9NYP9 233 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 ZBTB1Q9Y2K1 713 aa7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 BRCA1P38398 1863 aaKnown RBP7.87□□□□□ -1.15
DEPDC4-209ENST00000550587 KIAA1551Q9HCM1 1747 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 TNRC6CQ9HCJ0 1690 aaKnown RBP7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 BCAR3O75815 825 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 BRPF1P55201 1214 aaPredicted RBP7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 ERFEQ4G0M1 354 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 JMYQ8N9B5 988 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 C8orf58Q8NAV2 365 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 CNKSR1Q969H4 720 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 FMNL2Q96PY5 1086 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 BRIP1Q9BX63 1249 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 TSPYL4Q9UJ04 414 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 VIRMAQ69YN4 1812 aaKnown RBP7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 WDR90Q96KV7 1748 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 ADAMTS7Q9UKP4 1686 aa7.86□□□□□ -1.15
DEPDC4-209ENST00000550587 LOC100996750A0A140TA64 210 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms