RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ZNF428Q96B54 188 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 ZIC5Q96T25 663 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 EYA3Q99504 573 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 CNOT7Q9UIV1 285 aaKnown RBP9.85□□□□□ -0.83
NEK3-201ENST00000550331 C6orf229H3BNL8 230 aa9.84□□□□□ -0.83
NEK3-201ENST00000550331 DDX58O95786 925 aaKnown RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 RPS12P25398 132 aaKnown RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 HIRAP54198 1017 aaPredicted RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 HUNKP57058 714 aa9.84□□□□□ -0.83
NEK3-201ENST00000550331 RPS8P62241 208 aaKnown RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 GPSM2P81274 684 aa9.84□□□□□ -0.83
NEK3-201ENST00000550331 PRPF38BQ5VTL8 546 aaKnown RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 CDC37L1Q7L3B6 337 aa9.84□□□□□ -0.83
NEK3-201ENST00000550331 CCDC191Q8NCU4 936 aa9.84□□□□□ -0.83
NEK3-201ENST00000550331 PHAXQ9H814 394 aaKnown RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 POLLQ9UGP5 575 aa9.84□□□□□ -0.83
NEK3-201ENST00000550331 V9GY48 417 aaPredicted RBP9.84□□□□□ -0.83
NEK3-201ENST00000550331 PSMD14O00487 310 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 PCCAP05165 728 aaPredicted RBP9.83□□□□□ -0.84
NEK3-201ENST00000550331 CCDC152Q4G0S7 254 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 RTL5Q5HYW3 569 aaPredicted RBP9.83□□□□□ -0.84
NEK3-201ENST00000550331 CCDC30Q5VVM6 783 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 TBC1D16Q8TBP0 767 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 TRPM4Q8TD43 1214 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 MYD88Q99836 296 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 DBNDD1Q9H9R9 158 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 CWC25Q9NXE8 425 aaPredicted RBP9.83□□□□□ -0.84
NEK3-201ENST00000550331 PODXL2Q9NZ53 605 aa9.83□□□□□ -0.84
NEK3-201ENST00000550331 ELL2O00472 640 aaPredicted RBP9.82□□□□□ -0.84
NEK3-201ENST00000550331 ECE2O60344 883 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 PDE8AO60658 829 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 PPP1R37O75864 691 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 USP48Q86UV5 1035 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 C8orf58Q8NAV2 365 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 METTL22Q9BUU2 404 aaPredicted RBP9.82□□□□□ -0.84
NEK3-201ENST00000550331 SAGE1Q9NXZ1 904 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 RTL9Q8NET4 1388 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 COL4A1P02462 1669 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 ZNF609O15014 1411 aa9.82□□□□□ -0.84
NEK3-201ENST00000550331 SHTN1A0MZ66 631 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 TRPA1O75762 1119 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 UFL1O94874 794 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 SAMD7Q7Z3H4 446 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 ZDHHC16Q969W1 377 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 ZC3H12CQ9C0D7 883 aaKnown RBP9.81□□□□□ -0.84
NEK3-201ENST00000550331 SEC31BQ9NQW1 1179 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 GGA1Q9UJY5 639 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 TAF1P21675 1872 aa9.81□□□□□ -0.84
NEK3-201ENST00000550331 FAM155AB1AL88 458 aaPredicted RBP9.8□□□□□ -0.84
NEK3-201ENST00000550331 EGFRP00533 1210 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 VIL1P09327 827 aaKnown RBP9.8□□□□□ -0.84
NEK3-201ENST00000550331 KIF23Q02241 960 aaPredicted RBP9.8□□□□□ -0.84
NEK3-201ENST00000550331 CCDC27Q2M243 656 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 RGMBQ6NW40 437 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 DLK2Q6UY11 383 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 ANKIB1Q9P2G1 1089 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 MAP3K2Q9Y2U5 619 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 XDHP47989 1333 aa9.8□□□□□ -0.84
NEK3-201ENST00000550331 PPP1R3GB7ZBB8 358 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 ZNF157P51786 506 aaPredicted RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 CTSWP56202 376 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 ZNF280AP59817 542 aaPredicted RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 KIF4BQ2VIQ3 1234 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 TBC1D10BQ4KMP7 808 aaPredicted RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 KSR2Q6VAB6 950 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 KRT26Q7Z3Y9 468 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 CTU1Q7Z7A3 348 aaKnown RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 ANKRD18AQ8IVF6 992 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 TSPYL6Q8N831 410 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 C2orf69Q8N8R5 385 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 AGBL3Q8NEM8 1001 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 CCDC102AQ96A19 550 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 DCPSQ96C86 337 aaKnown RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 CDC5LQ99459 802 aaKnown RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 STK31Q9BXU1 1019 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 ADAM33Q9BZ11 813 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 GBA2Q9HCG7 927 aaPredicted RBP9.79□□□□□ -0.84
NEK3-201ENST00000550331 KCNQ5Q9NR82 932 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 RNF186Q9NXI6 227 aa9.79□□□□□ -0.84
NEK3-201ENST00000550331 PI4KAP2A4QPH2 592 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 IGKV5-2P06315 115 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 ATP2B4P23634 1241 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 NEXNQ0ZGT2 675 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 PODNQ7Z5L7 613 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 PI4KAP1Q8N8J0 262 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 ZFRQ96KR1 1074 aaKnown RBP9.78□□□□□ -0.84
NEK3-201ENST00000550331 IL16Q14005 1332 aa9.78□□□□□ -0.84
NEK3-201ENST00000550331 MED23Q9ULK4 1368 aa9.77□□□□□ -0.84
NEK3-201ENST00000550331 ADM5C9JUS6 153 aa9.77□□□□□ -0.85
NEK3-201ENST00000550331 TWISTNBQ3B726 338 aaPredicted RBP9.77□□□□□ -0.85
NEK3-201ENST00000550331 RBM26Q5T8P6 1007 aaKnown RBP9.77□□□□□ -0.85
NEK3-201ENST00000550331 RSBN1LQ6PCB5 846 aaPredicted RBP9.77□□□□□ -0.85
NEK3-201ENST00000550331 SULF1Q8IWU6 871 aa9.77□□□□□ -0.85
NEK3-201ENST00000550331 WWC1Q8IX03 1113 aa9.77□□□□□ -0.85
NEK3-201ENST00000550331 TTLL11Q8NHH1 800 aa9.77□□□□□ -0.85
NEK3-201ENST00000550331 JARID2Q92833 1246 aaPredicted RBP9.77□□□□□ -0.85
NEK3-201ENST00000550331 TSR2Q969E8 191 aaKnown RBP9.77□□□□□ -0.85
NEK3-201ENST00000550331 CCDC85AQ96PX6 553 aaPredicted RBP9.77□□□□□ -0.85
NEK3-201ENST00000550331 GGA3Q9NZ52 723 aa9.77□□□□□ -0.85
NEK3-201ENST00000550331 HPS5Q9UPZ3 1129 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms